Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 4118.5 2222 100.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 3874.7 2232 92.5
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 3756.8 2225 89.1
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 3607.4 2316 83.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3588.1 2226 86.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 3586.6 2226 85.9
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 3576.2 2240 85.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 3567.7 2231 85.4
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3565.0 2230 85.2
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 3379.3 2183 82.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 3027.7 2212 73.0
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2584.3 2091 65.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2564.6 2075 65.3
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2562.7 2077 65.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2543.5 2074 64.8
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2541.9 2084 64.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2540.0 2076 64.9
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2533.1 2085 64.4
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2523.4 2121 63.4
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2523.0 2074 64.7
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2522.3 2078 64.5
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2501.5 2072 64.7
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2499.9 2074 64.8
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2498.4 2070 64.4
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2493.8 2079 64.9
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2485.3 2089 64.6
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2475.7 2071 63.7
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2454.1 2078 62.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2432.5 2072 62.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2427.1 1897 67.7
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2422.5 2087 62.8
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2392.8 2072 61.6
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2387.1 2074 61.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2383.2 2143 61.7
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2378.6 2090 61.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2364.7 2085 61.1
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2351.2 2076 61.4
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2342.0 2077 60.5
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2336.2 2053 60.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2334.7 2083 61.9
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2332.8 2082 60.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2332.4 2089 60.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2327.7 2077 60.7
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2320.0 1995 61.4
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2313.5 2077 60.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2287.7 2000 60.0
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2284.6 2002 60.8
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2283.8 2068 59.7
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2267.3 2078 59.6
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2258.0 2069 58.9
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2258.0 2069 58.9
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2245.3 2083 58.4
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2239.5 2201 58.0
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2239.2 2058 59.6
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2238.0 2069 59.5
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2236.8 2419 54.2
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2232.2 2059 59.3
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2226.1 2095 57.7
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2202.2 1632 69.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2171.7 2059 57.4
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2157.9 2069 58.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2147.1 2133 56.9
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2136.3 2086 58.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2125.5 2252 54.5
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2105.9 2072 56.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2102.8 2135 55.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2068.5 1449 73.4
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2062.0 2012 57.4
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2012.7 1986 56.1
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1994.2 2084 54.7
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1982.2 1902 57.6
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1943.7 2152 53.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1907.1 3020 41.6
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1830.5 2072 50.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1792.7 2091 50.0
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1696.4 1677 56.6
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1668.7 1984 48.6
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1629.4 1626 55.8
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1592.4 1557 55.5
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1585.1 1691 52.4
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1583.2 1129 72.3
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1518.1 2030 43.9
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1466.8 833 91.5
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1410.6 2097 41.8
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1330.9 1343 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1302.3 2003 40.9
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 0.0e+00 1291.6 1080 68.8
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1263.8 2008 40.5
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1180.2 913 67.1
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1177.5 1567 45.5
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1173.7 2058 37.9
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1112.4 1030 58.0
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1107.0 1980 36.6
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1088.6 1405 47.2
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.4e-278 964.5 972 55.2
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 6.6e-273 945.7 828 59.4
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 3.5e-234 817.0 1275 41.8
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 2.5e-232 810.8 953 49.1
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.2e-207 728.0 789 51.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.8e-207 727.6 872 48.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 3.1e-198 697.6 723 53.8
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 8.8e-193 679.5 809 49.2
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.5e-184 652.1 578 60.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-179 635.2 442 74.7
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.3e-175 622.5 484 66.7
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.5e-165 587.8 386 75.6
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 4.3e-155 554.3 424 68.9
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 8.1e-154 550.1 373 74.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.1e-130 472.2 412 59.0
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 8.2e-114 417.2 811 37.4
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.9e-107 396.0 290 69.7
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.1e-105 388.7 264 74.6
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.2e-101 376.7 362 59.7
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.6e-96 359.0 802 34.3
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 3.2e-94 352.1 1498 26.6
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 2.1e-93 349.4 500 42.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 9.7e-91 340.5 294 58.2
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.1e-81 308.9 286 60.1
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.8e-76 293.1 1771 22.9
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.7e-66 260.0 427 41.7
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 6.3e-66 258.1 312 50.6
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 5.9e-64 251.5 160 78.1
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 5.9e-64 251.5 590 33.4
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-55 223.4 150 73.3
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.6e-55 221.5 168 70.2
CARHR059590 Cardamine hirsuta HOM05D003845 ORTHO05D004161 2.8e-53 216.1 287 60.3
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 8.3e-50 204.5 180 63.9
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 8.3e-50 204.5 180 63.9
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 8.3e-50 204.5 180 63.9
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 8.3e-50 204.5 180 63.9
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 9.2e-49 201.1 274 47.1
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.3e-47 197.2 232 51.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.9e-46 193.4 125 80.0
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.3e-42 177.9 118 77.1
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 5.6e-38 165.2 129 68.2
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.3e-36 159.8 139 63.3
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 7.1e-33 148.3 410 31.5
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.6e-32 145.6 232 40.1
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 8.6e-31 141.4 623 23.9
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.0e-28 132.5 196 40.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 6.4e-26 125.2 116 61.2
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.5e-22 114.0 171 45.0
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.5e-22 113.2 70 78.6
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 7.3e-22 111.7 173 49.7
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 5.3e-20 105.5 493 27.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 9.0e-20 104.8 75 72.0
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.0e-19 103.6 146 41.8
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.3e-18 100.9 76 67.1
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 2.9e-18 99.8 75 69.3
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.7e-15 90.5 142 46.5
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.9e-15 89.4 100 54.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.9e-15 89.4 53 79.2
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.9e-14 87.0 56 80.4
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 4.3e-14 85.9 158 33.5
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.6e-14 84.7 53 75.5
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.8e-13 83.2 70 62.9
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.8e-13 83.2 61 59.0
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 6.2e-13 82.0 53 75.5
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.1e-12 81.3 55 70.9
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.4e-12 80.9 62 66.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.4e-12 80.9 53 73.6
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 2.4e-12 80.1 53 77.4
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 4.0e-12 79.3 56 69.6
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 9.0e-12 78.2 105 38.1
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.2e-11 77.8 67 59.7
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.6e-11 76.6 66 59.1
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 7.6e-11 75.1 115 40.0
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 9.9e-11 74.7 71 54.9
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.4e-09 70.9 42 83.3
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 1.6e-08 67.4 44 79.5
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.0e-08 65.5 59 47.5
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 6.0e-08 65.5 51 66.7
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.0e-07 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 3.0e-07 63.2 37 81.1
COL.COLO4_16179 Corchorus olitorius HOM05D003845 ORTHO05D004161 5.6e-06 58.9 116 40.5
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 9.6e-06 58.2 47 55.3


User provided reference genes

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