Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.0e-117 426.8 221 100.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 7.9e-102 374.0 221 87.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.5e-100 369.0 209 90.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 7.1e-95 350.9 226 83.2
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.1e-92 343.6 234 77.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.0e-85 318.9 219 79.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 3.0e-85 318.9 228 76.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 5.1e-85 318.2 225 74.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.1e-85 318.2 219 78.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.1e-85 318.2 216 79.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.1e-85 318.2 216 79.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.5e-84 316.6 219 78.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.0e-76 289.7 227 67.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 9.1e-74 280.8 236 63.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.9e-69 265.4 177 73.4
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 8.8e-69 264.2 200 65.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.1e-68 263.8 185 69.2
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.3e-68 262.3 178 71.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.4e-68 261.9 212 64.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.7e-68 260.8 174 73.0
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.3e-67 258.1 207 63.8
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 8.2e-67 257.7 174 73.6
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 8.2e-67 257.7 174 73.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.8e-66 256.5 173 74.0
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.8e-66 256.5 178 71.3
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.8e-66 256.5 213 59.6
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.4e-66 256.1 207 60.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 3.1e-66 255.8 213 59.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.3e-66 255.0 179 69.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 9.1e-66 254.2 178 69.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.6e-65 252.7 199 64.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.6e-65 252.7 198 65.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.6e-65 252.7 178 68.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.5e-65 252.3 175 71.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.5e-65 251.9 208 60.1
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 5.9e-65 251.5 179 67.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 5.9e-65 251.5 174 70.1
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 7.7e-65 251.1 221 57.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 7.7e-65 251.1 221 57.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 7.7e-65 251.1 204 62.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.0e-64 250.8 218 60.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.2e-64 249.6 210 63.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.9e-64 249.2 192 66.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-64 249.2 187 64.2
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.8e-64 248.8 178 67.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.8e-64 248.8 174 67.8
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 6.5e-64 248.1 174 71.3
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.5e-64 248.1 178 68.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 8.5e-64 247.7 174 70.1
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.1e-63 247.3 185 64.3
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.1e-63 247.3 174 67.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-63 247.3 189 64.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.5e-63 246.9 191 63.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.9e-63 246.5 174 67.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 3.2e-63 245.7 176 68.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.2e-63 245.7 237 56.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.2e-63 245.7 194 63.9
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.2e-63 245.4 178 68.0
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.2e-63 245.4 174 67.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 7.2e-63 244.6 176 66.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 7.2e-63 244.6 179 66.5
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 7.2e-63 244.6 198 61.1
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.2e-63 244.6 217 59.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.2e-63 244.6 214 58.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 7.2e-63 244.6 174 66.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 9.4e-63 244.2 174 67.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.4e-63 244.2 188 65.4
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.4e-63 244.2 214 58.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.2e-62 243.8 174 69.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-62 243.8 178 66.3
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.7e-62 242.7 203 58.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 3.6e-62 242.3 212 58.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 3.6e-62 242.3 180 64.4
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 6.1e-62 241.5 179 64.2
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 6.1e-62 241.5 214 57.9
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 8.0e-62 241.1 197 60.4
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.0e-61 240.7 146 77.4
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.0e-61 240.7 181 63.5
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.4e-61 240.4 191 63.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.8e-61 240.0 179 66.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.3e-61 239.6 197 59.9
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.0e-61 238.8 202 59.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.2e-61 238.4 198 59.1
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 6.7e-61 238.0 181 64.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.8e-61 237.7 178 65.2
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.5e-60 236.9 179 65.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.0e-60 236.5 172 66.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.3e-60 235.7 181 63.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.4e-60 235.3 212 60.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.8e-59 231.9 187 61.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.8e-59 231.9 214 58.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 6.3e-59 231.5 185 64.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.2e-59 231.1 181 63.5
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.4e-58 230.3 143 78.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.8e-58 229.9 152 73.7
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.1e-58 229.2 143 75.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.3e-58 228.4 234 52.6
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 7.0e-58 228.0 145 74.5
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 9.1e-58 227.6 209 59.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 9.1e-58 227.6 180 61.7
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-57 226.9 187 59.9
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.0e-57 226.5 145 74.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.5e-57 225.3 149 72.5
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 5.9e-57 224.9 207 56.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-56 224.2 149 72.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.5e-56 221.1 153 69.9
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 8.5e-56 221.1 143 74.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.5e-55 220.3 134 76.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.5e-55 219.5 140 74.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.5e-55 219.5 205 57.1
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.2e-55 218.8 145 69.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.1e-54 216.5 160 69.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.1e-54 216.5 142 72.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-53 213.8 179 58.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.3e-53 213.0 184 57.1
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 4.0e-53 212.2 208 57.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.8e-53 211.5 216 53.7
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 6.8e-53 211.5 179 58.1
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.8e-51 205.3 217 50.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 2.4e-50 203.0 148 66.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 3.1e-50 202.6 176 58.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.0e-48 197.6 152 67.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.9e-47 193.4 121 71.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.1e-46 188.3 137 69.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.1e-46 188.3 142 61.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.7e-44 181.8 142 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.3e-43 178.3 141 58.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-42 177.6 142 57.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.4e-42 176.4 167 56.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 3.1e-42 176.0 139 58.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 4.1e-42 175.6 184 50.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 5.4e-42 175.3 174 55.2
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 3.8e-40 169.1 141 64.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 3.8e-40 169.1 156 58.3
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.1e-38 163.3 194 47.4
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.8e-38 162.9 143 57.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 7.0e-34 148.3 144 51.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.6e-33 147.1 143 57.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-33 146.7 218 40.8
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.6e-32 141.7 175 47.4
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 6.2e-30 135.2 191 44.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.2e-28 131.0 125 52.8
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.4e-26 123.2 126 55.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.6e-25 119.0 142 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.1e-22 108.2 79 65.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.3e-19 98.2 138 37.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-17 94.4 239 30.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.6e-17 92.4 129 37.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.0e-12 77.0 131 35.9
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.8e-12 75.5 149 29.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.9e-10 70.5 83 48.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-09 67.8 118 31.4
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.6e-09 67.4 116 31.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.3e-07 59.7 152 28.3


User provided reference genes

Program Settings