Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 6.9e-109 397.5 230 100.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.3e-86 323.6 231 85.3
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 2.2e-83 312.8 231 83.5
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.2e-65 253.8 231 74.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.4e-61 239.6 259 66.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.9e-60 235.0 266 66.5
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 4.4e-55 218.8 247 65.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.3e-54 217.2 248 65.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-54 216.9 240 61.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.2e-54 216.5 248 65.7
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-54 215.7 246 63.8
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.1e-53 214.2 247 66.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.4e-53 213.8 254 57.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-53 213.4 251 65.3
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 7.8e-52 208.0 252 62.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 7.8e-52 208.0 251 63.3
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 8.9e-48 194.5 262 53.8
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-46 189.1 219 60.7
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.7e-46 189.1 260 51.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.1e-45 187.6 256 50.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.4e-45 185.3 261 60.2
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.1e-42 177.6 259 51.4
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 3.3e-42 176.0 263 50.6
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 4.3e-42 175.6 259 51.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 4.3e-42 175.6 259 51.0
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.6e-41 173.7 256 49.2
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.5e-39 167.2 250 50.8
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.6e-39 166.4 253 51.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.5e-36 156.0 280 51.1
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.3e-35 154.1 271 52.8
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.7e-35 153.7 285 47.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 8.9e-32 141.4 263 50.6
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 4.2e-29 132.5 238 43.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 6.2e-25 118.6 232 43.5
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 4.0e-24 115.9 235 40.4
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.3e-24 115.5 235 40.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.5e-23 114.0 244 41.0
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.6e-23 113.2 240 44.2
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.4e-23 112.8 229 39.7
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 4.4e-23 112.5 199 44.2
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 9.9e-23 111.3 202 44.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 9.9e-23 111.3 240 41.7
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.7e-22 110.5 235 41.7
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.2e-22 110.2 231 39.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 2.9e-22 109.8 202 42.6
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.9e-22 109.8 192 45.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.1e-21 107.8 233 39.9
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.9e-21 107.1 233 40.8
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.2e-21 106.3 234 40.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 4.2e-21 105.9 219 41.1
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.2e-21 105.9 236 39.0
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.1e-21 105.1 208 43.8
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-20 104.4 209 43.5
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.7e-20 103.2 234 40.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-20 102.8 209 43.5
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.5e-20 102.8 213 42.3
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 4.6e-20 102.4 226 42.5
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 4.6e-20 102.4 220 38.6
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 6.0e-20 102.1 235 40.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.8e-20 101.7 207 42.5
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.8e-20 101.7 221 38.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.0e-19 101.3 201 41.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.0e-19 101.3 198 42.9
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.3e-19 100.9 215 41.9
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.3e-19 100.1 256 37.5
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.0e-19 99.8 229 38.4
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.0e-19 99.8 221 40.3
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 3.9e-19 99.4 223 39.9
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 6.6e-19 98.6 196 41.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 6.6e-19 98.6 178 41.6
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.6e-19 98.6 201 41.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 6.6e-19 98.6 258 38.4
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 8.7e-19 98.2 198 42.9
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-18 97.4 205 42.9
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-18 97.4 205 42.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-18 97.4 205 42.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.9e-18 97.1 201 41.3
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.5e-18 96.7 190 40.5
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.5e-18 96.7 218 40.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 3.3e-18 96.3 162 46.3
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.3e-18 96.3 207 42.5
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 4.3e-18 95.9 234 36.3
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 4.3e-18 95.9 162 43.8
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 5.6e-18 95.5 243 37.0
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 5.6e-18 95.5 220 37.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 7.3e-18 95.1 236 37.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 9.6e-18 94.7 222 37.8
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.3e-17 94.4 223 36.8
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.6e-17 94.0 201 39.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.6e-17 94.0 223 37.7
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 3.6e-17 92.8 221 38.5
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 4.8e-17 92.4 182 46.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.8e-17 92.4 234 38.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 8.1e-17 91.7 201 41.8
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 8.1e-17 91.7 233 37.8
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.8e-16 90.5 204 41.7
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 3.4e-15 86.3 187 38.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 3.4e-15 86.3 177 40.7
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 3.4e-15 86.3 199 38.7
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.8e-15 85.5 203 41.4
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.3e-14 84.3 175 40.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.2e-14 83.6 215 34.0
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.9e-14 83.2 199 37.2
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 4.9e-14 82.4 179 35.8
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 6.4e-14 82.0 169 40.8
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 8.4e-14 81.6 202 39.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.4e-13 80.9 216 38.0
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.9e-13 80.5 167 41.3
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.9e-13 80.5 199 37.2
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.4e-13 80.1 224 34.8
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 9.3e-13 78.2 218 36.7
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.3e-13 78.2 154 40.9
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.6e-12 77.4 112 50.9
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.6e-12 77.4 160 40.6
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.1e-12 77.0 100 51.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.1e-12 77.0 182 37.9
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 3.5e-12 76.3 157 40.1
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.0e-12 75.5 190 38.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-11 74.3 171 41.5
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 6.7e-11 72.0 137 40.1
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.7e-11 72.0 100 48.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.7e-11 72.0 100 48.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 8.7e-11 71.6 124 43.5
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 3.3e-10 69.7 180 38.9
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 5.6e-10 68.9 112 47.3
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.1e-09 67.0 231 32.0
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.1e-09 67.0 241 30.7
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 2.8e-09 66.6 193 35.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.8e-09 66.6 141 38.3
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.7e-09 66.2 242 31.8
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.1e-09 65.1 172 37.2
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 8.1e-09 65.1 182 35.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-08 64.3 172 37.8
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.4e-08 64.3 162 34.6
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.4e-08 63.5 173 36.4
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.2e-07 61.2 155 35.5
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 4.5e-07 59.3 161 34.2
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.0e-06 58.2 177 32.8
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.7e-06 57.4 125 37.6


User provided reference genes

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