Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.9e-199 698.4 356 100.0
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-193 679.9 356 96.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.3e-186 654.1 343 96.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.1e-182 643.3 356 91.3
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.7e-178 629.4 356 87.9
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 6.4e-178 627.5 356 88.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 9.2e-177 623.6 356 86.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.0e-176 622.5 356 86.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.0e-176 622.5 356 86.8
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.7e-176 622.1 356 87.6
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 6.0e-176 620.9 356 87.1
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 8.0e-173 610.5 355 87.0
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 4.6e-168 594.7 356 84.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.9e-150 536.2 356 75.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.5e-150 535.8 358 75.1
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.4e-148 529.3 357 74.5
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.2e-147 526.9 360 71.9
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.2e-147 526.9 355 72.1
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 3.4e-147 525.4 356 73.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.4e-147 525.4 360 73.9
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.7e-146 523.1 360 71.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 2.4e-145 519.2 358 71.5
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.6e-144 516.5 354 71.5
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 4.6e-144 515.0 360 69.4
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 6.0e-144 514.6 361 72.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.0e-143 513.8 358 70.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.3e-143 513.5 358 70.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.3e-143 512.7 354 72.6
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 3.0e-143 512.3 372 69.1
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.1e-142 510.4 358 71.2
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.5e-142 510.0 361 71.5
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.5e-142 510.0 356 71.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.5e-142 510.0 355 70.4
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.9e-142 509.6 355 70.7
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.3e-142 508.8 358 70.1
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 4.3e-142 508.4 377 69.0
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 4.3e-142 508.4 356 70.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.6e-142 508.1 355 71.0
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.6e-141 506.5 356 70.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.1e-141 506.1 362 71.3
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.8e-141 505.8 367 70.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 4.8e-141 505.0 357 71.1
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.8e-141 505.0 366 70.2
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 6.2e-141 504.6 335 75.5
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 6.9e-140 501.1 358 70.4
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.2e-139 500.4 333 76.0
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.5e-139 498.4 331 76.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 4.5e-139 498.4 358 71.5
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.9e-139 497.3 354 70.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 9.9e-139 497.3 379 68.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.2e-138 496.1 356 70.8
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.8e-138 495.4 357 69.2
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.9e-138 495.0 354 71.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 6.4e-138 494.6 330 73.6
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.4e-137 493.4 362 68.2
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.4e-137 493.4 356 69.4
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.4e-137 492.7 356 69.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 3.5e-136 488.8 365 68.2
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.0e-136 488.0 357 69.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 2.3e-135 486.1 360 69.2
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.7e-135 484.2 363 67.5
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 9.6e-134 480.7 355 69.6
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 3.7e-133 478.8 360 66.1
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 8.1e-133 477.6 333 72.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.4e-132 476.9 330 71.5
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.5e-131 473.4 362 66.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 5.5e-129 464.9 410 60.7
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 7.1e-129 464.5 364 64.3
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 7.1e-129 464.5 258 90.7
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.8e-127 459.9 360 68.6
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 7.4e-126 454.5 330 68.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.3e-125 453.8 258 89.5
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 3.7e-125 452.2 433 58.4
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 8.2e-125 451.1 355 67.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.4e-124 450.3 360 64.7
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.5e-123 446.8 282 77.7
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.6e-123 446.0 355 63.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 6.5e-122 441.4 353 65.2
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-120 437.2 358 63.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.0e-119 434.1 353 63.7
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.3e-118 429.1 332 69.0
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.4e-116 423.7 301 68.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 4.5e-115 418.7 335 64.8
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.3e-114 417.2 337 64.4
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-112 410.6 354 61.9
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.1e-112 409.8 353 61.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 5.7e-110 401.7 263 75.3
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.0e-106 388.7 367 57.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 3.2e-105 386.0 337 57.6
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 7.2e-105 384.8 260 75.0
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.1e-104 383.3 258 74.4
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.9e-103 379.0 265 74.0
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.4e-102 375.6 261 73.9
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 7.4e-102 374.8 332 56.0
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 8.2e-101 371.3 337 57.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.4e-100 369.8 259 72.2
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 3.1e-100 369.4 271 69.7
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.0e-98 364.4 301 60.5
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-96 357.5 286 60.1
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 8.0e-96 354.8 251 72.1
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 4.4e-94 349.0 256 68.8
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 5.0e-90 335.5 355 50.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.8e-85 319.7 311 55.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.8e-84 317.0 207 78.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.2e-80 304.3 349 47.9
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.0e-74 282.3 346 46.5
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 8.6e-74 281.6 187 75.9
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.6e-72 276.2 219 67.6
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.8e-63 247.3 210 60.5
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.1e-56 223.8 439 34.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.2e-51 208.0 373 36.7
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 7.8e-51 205.3 216 50.5
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.3e-49 198.7 140 71.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-38 164.9 140 58.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.9e-37 160.2 165 55.2
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.1e-33 148.3 317 31.5
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 9.9e-30 135.2 146 51.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.9e-29 133.7 105 61.9
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.4e-28 131.3 91 76.9
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.4e-28 131.3 138 54.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-27 128.3 120 50.8
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 6.0e-27 125.9 96 62.5
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.6e-24 116.7 79 70.9
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 9.0e-23 112.1 74 71.6
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.6e-22 110.5 299 30.1
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 9.9e-22 108.6 72 70.8
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.4e-20 104.8 93 63.4
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.2e-13 80.9 75 60.0
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.3e-08 65.1 111 33.3
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 6.9e-07 59.3 104 33.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.0e-07 58.9 174 25.9
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 2.0e-06 57.8 150 27.3
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 2.0e-06 57.8 146 29.5
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.6e-06 57.4 188 26.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.6e-06 57.4 147 27.2
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 2.6e-06 57.4 107 33.6
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 2.6e-06 57.4 147 27.2
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 3.4e-06 57.0 182 25.3
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 4.5e-06 56.6 29 86.2
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.5e-06 56.6 174 25.3
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 5.9e-06 56.2 141 27.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.9e-06 56.2 147 27.2
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 1.0e-05 55.5 136 29.4


User provided reference genes

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