Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.1e-80 303.1 147 100.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-76 289.3 142 96.5
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 9.3e-75 283.5 142 93.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.6e-74 282.7 142 93.7
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.1e-74 282.3 147 93.2
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.0e-73 280.0 142 92.3
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-73 280.0 142 92.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.3e-73 278.9 142 92.3
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.9e-73 278.1 145 90.3
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.1e-73 277.7 145 92.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 6.7e-73 277.3 147 89.8
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.3e-72 274.6 142 89.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.1e-71 272.3 142 89.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.4e-70 269.6 158 82.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.9e-70 267.3 142 85.9
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.6e-69 263.8 142 85.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 6.5e-68 260.8 144 85.4
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 4.6e-66 254.6 145 82.8
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 6.0e-66 254.2 145 82.8
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-65 252.3 145 82.1
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.1e-64 250.0 145 78.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.3e-64 248.1 141 78.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.2e-63 245.7 145 80.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.8e-63 245.4 139 81.3
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 3.7e-63 245.0 139 81.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 3.7e-63 245.0 139 79.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.4e-62 243.0 141 80.1
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.8e-62 242.7 147 78.2
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.8e-62 242.7 164 73.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 4.1e-62 241.5 139 78.4
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.2e-61 240.0 142 77.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.5e-61 239.6 145 75.2
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.0e-61 239.2 144 77.8
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 3.4e-61 238.4 170 70.0
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.4e-61 238.4 141 78.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 4.5e-61 238.0 141 75.9
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 5.9e-61 237.7 139 79.1
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 5.9e-61 237.7 140 77.1
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.0e-60 236.9 142 75.4
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.0e-60 236.9 137 78.8
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.7e-60 236.1 141 75.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.2e-60 235.7 141 75.2
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.8e-60 235.0 140 75.0
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.4e-59 233.0 139 77.7
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.4e-59 233.0 145 73.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.2e-59 231.5 139 77.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.2e-59 231.5 139 77.0
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 5.5e-59 231.1 145 71.7
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.7e-58 228.8 142 73.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.6e-58 228.4 144 75.7
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 4.6e-58 228.0 142 71.8
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 7.9e-58 227.3 145 72.4
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.0e-57 226.9 147 70.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.0e-57 226.9 144 70.1
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.4e-57 226.5 144 69.4
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-57 226.5 144 69.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.8e-57 226.1 142 71.8
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 5.1e-57 224.6 144 70.1
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 8.8e-57 223.8 142 71.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.5e-56 223.0 144 69.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.9e-56 222.6 144 74.3
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.3e-56 221.9 145 73.8
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.3e-56 221.9 144 68.1
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 4.3e-56 221.5 209 57.4
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 9.7e-56 220.3 144 70.1
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.2e-55 219.2 139 70.5
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 2.8e-55 218.8 142 71.1
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 4.8e-55 218.0 122 79.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 8.2e-55 217.2 144 69.4
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.2e-55 217.2 142 68.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-54 216.9 135 71.9
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.1e-54 216.9 122 81.1
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.1e-54 216.9 142 68.3
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-54 216.1 144 70.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.8e-54 216.1 142 69.7
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.1e-54 215.3 135 71.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.1e-54 215.3 135 71.1
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 6.9e-54 214.2 140 68.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 142 66.9
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.5e-53 213.0 144 70.8
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.5e-53 213.0 144 69.4
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.0e-53 212.6 140 70.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.9e-53 211.1 138 65.9
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.9e-52 208.8 142 66.9
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.8e-52 208.4 144 68.1
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 5.0e-52 208.0 148 66.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 5.0e-52 208.0 148 66.9
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.0e-52 208.0 143 69.9
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.0e-52 208.0 138 65.2
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 8.5e-52 207.2 144 67.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.9e-51 206.1 136 68.4
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.9e-51 206.1 144 66.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-51 206.1 142 66.9
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.5e-51 205.7 142 66.2
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.2e-51 205.3 145 64.8
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.4e-51 203.8 133 66.9
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 9.4e-51 203.8 143 65.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.1e-50 202.6 144 64.6
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 7.9e-50 200.7 142 65.5
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-49 199.5 142 64.1
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-49 199.5 117 75.2
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.3e-49 199.1 142 63.4
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.9e-49 198.4 143 65.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.7e-49 197.6 143 65.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 8.8e-49 197.2 120 74.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 8.8e-49 197.2 144 65.3
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.1e-48 196.8 122 77.9
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-48 196.8 141 64.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.1e-48 196.8 145 63.4
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.6e-48 195.7 144 65.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 4.4e-48 194.9 120 72.5
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.7e-48 194.5 137 65.0
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 7.4e-48 194.1 147 61.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 7.4e-48 194.1 147 61.2
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 7.4e-48 194.1 136 66.2
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-46 190.3 142 64.1
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.8e-46 189.5 147 59.2
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.8e-46 189.5 140 59.3
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.0e-46 187.6 147 60.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.2e-45 186.8 137 61.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-45 186.4 142 60.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 4.5e-45 184.9 142 59.2
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 7.7e-45 184.1 120 71.7
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.0e-44 183.7 112 72.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.8e-44 181.8 113 70.8
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 6.5e-44 181.0 117 69.2
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.9e-43 179.5 141 60.3
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.5e-43 179.1 139 61.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 5.5e-43 177.9 118 69.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.9e-41 171.8 111 70.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 3.3e-40 168.7 144 58.3
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.1e-38 163.7 134 54.5
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-38 163.3 99 70.7
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.4e-38 162.5 145 53.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-32 143.3 125 51.2
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-32 143.3 125 51.2
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.0e-32 142.9 131 51.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.7e-29 132.5 86 72.1
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 5.5e-27 124.8 139 43.9
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 9.4e-27 124.0 131 46.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-26 123.6 99 57.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 2.7e-26 122.5 99 55.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.6e-24 115.9 127 44.1
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.7e-24 114.8 93 57.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.4e-22 110.2 145 42.8
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.7e-21 105.9 137 40.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-21 105.9 137 35.8
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.5e-21 105.5 144 38.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.0e-20 104.0 141 37.6
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.3e-19 99.0 139 36.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.2e-19 98.6 135 39.3
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.2e-16 90.5 99 49.5
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 4.4e-16 88.6 54 75.9
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.8e-16 87.4 54 68.5
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 54 74.1
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 54 74.1
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 54 74.1
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 8.3e-15 84.3 65 58.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 8.3e-15 84.3 123 35.8
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-14 84.0 59 62.7
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-13 80.1 112 40.2
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.3e-12 76.3 89 41.6
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 4.0e-09 65.5 32 84.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 8.9e-09 64.3 117 33.3
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.6e-08 62.8 49 57.1
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 4.9e-07 58.5 41 58.5
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.1e-06 55.5 59 47.5


User provided reference genes

Program Settings