Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.9e-93 345.9 181 100.0
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.0e-86 323.6 178 94.4
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 7.2e-77 290.8 188 84.6
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 4.4e-66 255.0 195 76.4
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.2e-65 252.7 177 79.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.1e-64 250.4 191 75.9
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 3.3e-58 228.8 194 71.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 4.4e-58 228.4 193 71.0
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.7e-57 226.5 192 71.4
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 8.3e-57 224.2 192 71.4
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 3.5e-55 218.8 173 75.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.0e-54 217.2 196 67.9
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.2e-53 211.8 197 64.5
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 9.4e-53 210.7 187 69.0
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 9.4e-53 210.7 187 69.0
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 5.2e-51 204.9 170 72.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 6.8e-51 204.5 173 72.3
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.7e-50 201.4 197 64.5
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.3e-46 190.3 195 60.5
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.8e-27 124.8 174 52.9
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.4e-26 122.5 174 51.7
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 4.4e-26 122.1 196 48.0
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 5.8e-26 121.7 201 44.8
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.8e-26 121.7 174 51.7
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 9.8e-26 120.9 174 50.0
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 2.9e-25 119.4 189 45.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-25 119.4 172 51.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-25 119.4 196 45.9
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.3e-25 117.9 173 50.9
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 8.3e-25 117.9 172 50.6
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 8.3e-25 117.9 196 45.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.4e-24 117.1 162 54.9
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.1e-24 115.5 173 48.0
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.4e-24 115.2 194 46.4
CARHR119180 Cardamine hirsuta HOM05D004654 ORTHO05D005414 7.0e-24 114.8 94 68.1
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 9.2e-24 114.4 182 45.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.1e-23 113.2 171 45.6
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 4.6e-23 112.1 203 39.4
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 6.0e-23 111.7 196 42.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 6.0e-23 111.7 158 46.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.8e-23 111.3 194 45.4
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 7.8e-23 111.3 196 45.9
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 7.8e-23 111.3 163 50.9
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-22 110.5 216 41.2
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-22 110.5 216 41.2
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.3e-22 109.8 182 45.1
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 3.9e-22 109.0 217 41.0
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.9e-22 109.0 171 43.3
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 5.1e-22 108.6 189 40.7
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 6.6e-22 108.2 194 45.9
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.6e-22 107.8 186 45.2
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.6e-22 107.8 161 47.8
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.1e-21 107.5 191 39.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.9e-21 106.7 180 42.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-21 106.7 162 49.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-21 106.7 162 49.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.9e-21 106.7 170 45.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 4.3e-21 105.5 197 42.1
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 4.3e-21 105.5 191 44.0
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 5.6e-21 105.1 181 42.5
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 7.3e-21 104.8 70 82.9
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 1.2e-20 104.0 189 42.9
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 3.6e-20 102.4 190 42.6
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 3.6e-20 102.4 190 40.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 8.1e-20 101.3 207 40.1
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.1e-19 100.9 208 41.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.3e-19 99.8 194 43.3
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.3e-19 99.8 188 40.4
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.1e-19 99.4 105 57.1
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.0e-19 99.0 173 46.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 4.0e-19 99.0 178 41.6
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 6.8e-19 98.2 192 42.2
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.2e-18 97.4 175 40.6
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.5e-18 97.1 182 42.9
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-18 97.1 149 44.3
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.0e-18 96.7 128 53.9
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.6e-18 96.3 155 44.5
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.6e-18 96.3 212 36.3
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.5e-18 94.7 208 34.1
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 7.5e-18 94.7 195 37.9
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 7.5e-18 94.7 186 41.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.5e-18 94.7 80 60.0
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.5e-18 94.7 80 60.0
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.7e-17 93.6 217 33.6
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.9e-17 92.8 205 41.5
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 6.4e-17 91.7 177 41.2
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.4e-16 90.5 186 39.2
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.4e-16 90.5 227 36.1
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.4e-16 90.5 227 36.1
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.9e-16 90.1 169 40.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.4e-16 89.7 191 40.8
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 3.2e-16 89.4 203 40.9
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.1e-16 89.0 168 42.3
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.1e-16 89.0 181 42.5
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.1e-16 88.2 209 34.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 7.1e-16 88.2 170 40.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 7.1e-16 88.2 179 38.0
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 9.2e-16 87.8 173 40.5
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.6e-15 87.0 184 40.2
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.7e-15 86.3 159 39.6
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.7e-15 86.3 190 35.8
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.7e-15 86.3 192 39.6
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 3.5e-15 85.9 192 36.5
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 4.6e-15 85.5 207 37.2
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 4.6e-15 85.5 160 39.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 4.6e-15 85.5 86 55.8
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 6.0e-15 85.1 200 36.0
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 6.0e-15 85.1 124 42.7
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.0e-15 85.1 179 36.9
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 7.8e-15 84.7 182 38.5
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.3e-14 84.0 175 37.7
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-14 83.6 214 36.0
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.7e-14 83.6 169 37.3
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.3e-14 83.2 220 34.5
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.0e-14 82.8 114 45.6
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 5.1e-14 82.0 160 41.9
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 6.6e-14 81.6 172 39.5
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.6e-14 81.3 200 36.5
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.1e-13 80.9 111 49.5
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.1e-13 80.9 211 35.1
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.1e-13 80.9 179 36.9
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.9e-13 80.1 107 44.9
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 3.3e-13 79.3 137 46.7
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.3e-13 79.3 172 34.9
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 5.6e-13 78.6 196 35.7
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 5.6e-13 78.6 184 37.5
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 7.3e-13 78.2 151 41.1
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 9.6e-13 77.8 162 39.5
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.2e-12 77.4 221 31.7
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-12 77.0 106 47.2
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.8e-12 76.3 171 36.8
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.7e-12 75.5 194 33.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 4.7e-12 75.5 181 35.9
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.2e-12 75.1 203 33.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 8.1e-12 74.7 181 39.2
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 8.1e-12 74.7 191 33.5
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.1e-11 72.8 109 45.0
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.1e-11 72.8 175 36.6
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 8.9e-11 71.2 191 36.6
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 8.9e-11 71.2 195 33.8
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.0e-10 70.1 95 46.3
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.8e-10 68.6 119 38.7
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-09 67.0 59 57.6
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.2e-09 66.6 171 33.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.4e-08 63.9 62 51.6
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.9e-08 63.5 162 32.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.4e-08 63.2 202 32.7
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.2e-08 62.8 189 36.5
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 7.1e-08 61.6 78 52.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 9.3e-08 61.2 73 53.4
SEGI_17362 Sequoiadendron giganteum HOM05D004654 ORTHO05D005414 3.9e-06 55.8 74 39.2
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 3.9e-06 55.8 188 30.9


User provided reference genes

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