Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.0e-228 796.6 456 100.0
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-186 654.8 471 84.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 9.1e-145 517.7 522 67.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-131 474.2 480 67.3
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-114 417.2 501 61.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.0e-104 382.1 509 58.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.8e-74 283.1 593 47.4
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-73 281.6 481 53.4
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 8.7e-71 271.9 502 50.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 8.7e-71 271.9 502 50.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 6.2e-69 265.8 480 51.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.5e-67 261.2 566 44.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.6e-67 258.8 569 46.9
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-65 255.0 574 46.5
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-64 251.5 499 50.3
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.2e-64 251.5 591 45.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 4.8e-61 239.6 550 45.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 7.6e-59 232.3 553 45.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-58 231.9 557 44.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.9e-58 229.6 558 44.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-57 228.0 592 42.9
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 5.5e-57 226.1 574 38.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-56 224.9 556 42.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.1e-56 224.2 493 44.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.7e-56 223.8 585 43.8
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 6.0e-56 222.6 473 48.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.0e-55 220.3 558 40.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.7e-54 216.1 567 39.9
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 7.4e-54 215.7 588 36.4
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 9.7e-54 215.3 582 37.8
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.7e-53 213.4 623 37.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.1e-52 211.8 530 42.3
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.8e-52 211.1 629 37.0
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.1e-52 209.9 580 37.4
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.0e-51 207.6 565 39.8
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 7.7e-51 205.7 540 41.7
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.3e-50 204.9 603 39.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.3e-50 204.9 534 37.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.9e-50 203.8 475 42.7
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.5e-50 202.6 597 35.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.1e-49 201.8 584 39.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.4e-49 201.4 623 37.7
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-49 201.1 597 35.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-49 201.1 597 35.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-49 201.1 581 39.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.5e-49 200.7 597 35.2
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.2e-49 200.3 611 37.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.2e-49 199.9 628 36.0
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 5.5e-49 199.5 631 36.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 7.2e-49 199.1 557 37.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.1e-48 197.6 618 37.2
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-48 197.6 571 39.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.1e-48 196.1 633 35.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 7.9e-48 195.7 635 35.6
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 7.9e-48 195.7 624 37.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.3e-47 194.1 617 37.0
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.3e-46 190.3 616 35.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.3e-46 190.3 576 37.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 4.3e-46 189.9 562 38.4
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.7e-46 189.5 560 38.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.7e-46 189.5 593 38.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.3e-45 188.3 584 38.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.3e-45 188.3 581 36.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.7e-45 188.0 590 35.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.8e-45 187.2 581 36.8
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.7e-45 186.8 593 33.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.7e-45 186.8 541 41.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 3.7e-45 186.8 522 37.7
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.8e-45 186.4 640 35.2
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.1e-44 185.3 565 35.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 9.1e-44 182.2 539 38.0
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.0e-43 181.0 548 36.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.7e-43 179.1 544 41.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.0e-42 178.7 565 39.5
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.9e-42 177.2 542 35.2
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.9e-42 177.2 460 37.2
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 8.5e-42 175.6 547 38.8
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-41 175.3 617 34.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.4e-41 174.9 469 37.5
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.4e-41 174.9 440 37.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.9e-41 174.5 581 37.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.2e-41 173.7 524 34.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.4e-41 172.2 506 38.1
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.2e-40 171.8 650 34.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.7e-40 169.9 512 35.2
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.1e-40 169.5 609 35.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.9e-40 169.1 548 38.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.9e-40 169.1 518 35.7
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.0e-39 168.7 595 36.3
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.8e-39 167.9 625 34.9
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.3e-39 167.5 629 36.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.0e-39 167.2 568 35.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.1e-39 166.4 449 37.0
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.1e-39 166.4 646 34.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.6e-38 164.1 626 35.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.4e-38 163.3 536 38.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 7.4e-38 162.5 628 35.8
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 6.3e-37 159.5 654 35.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.4e-36 158.3 661 35.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-36 158.3 516 35.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.4e-36 158.3 645 34.3
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.2e-35 155.2 553 35.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.5e-35 154.8 637 30.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.0e-35 154.5 597 36.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 7.7e-35 152.5 483 35.2
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 7.7e-35 152.5 486 33.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-34 152.1 578 33.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.7e-34 151.4 591 35.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.1e-33 148.7 567 32.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.2e-33 147.1 437 36.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.2e-33 146.7 655 33.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.2e-33 146.7 499 36.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.7e-32 144.1 402 35.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.6e-32 143.7 590 33.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-32 143.7 615 32.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.7e-32 143.3 669 32.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.7e-32 143.3 530 33.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.0e-31 142.1 399 35.3
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.9e-31 140.2 374 41.7
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.2e-31 139.8 550 37.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 5.2e-31 139.8 530 32.8
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.3e-30 137.1 669 30.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.4e-30 136.7 532 33.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.4e-30 136.0 602 32.6
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.4e-28 131.7 371 35.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.4e-28 131.0 597 32.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.1e-28 130.6 642 32.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 5.3e-28 129.8 324 37.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.6e-27 127.5 286 40.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.5e-27 126.7 535 30.8
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.5e-27 126.7 653 30.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.3e-26 125.2 552 31.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-25 122.1 671 31.4
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.4e-25 119.0 598 30.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.2e-24 118.6 524 29.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.7e-24 117.5 396 36.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.2e-22 112.1 495 35.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-22 111.3 557 30.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.1e-20 105.5 498 32.7
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-20 105.5 420 36.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.7e-19 100.9 431 33.9
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.7e-19 99.4 170 45.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 7.7e-19 99.4 662 31.3
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.9e-17 94.7 269 40.5
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.2e-17 94.0 509 29.7
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.1e-16 91.3 556 26.6
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-16 90.9 92 63.0
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.7e-16 90.9 651 25.2
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.7e-16 90.1 177 35.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.7e-16 90.1 553 29.8
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.1e-16 89.7 152 44.7
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 6.8e-15 86.3 185 47.0
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 1.5e-14 85.1 175 44.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.0e-14 84.7 237 36.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.4e-14 83.6 270 34.4
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.7e-14 83.2 498 28.7
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 1.3e-13 82.0 184 49.5
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 5.4e-12 76.6 88 56.8
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 5.4e-12 76.6 88 56.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.9e-11 73.2 176 36.9
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-10 71.6 321 32.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.1e-09 68.9 325 30.5
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 1.5e-09 68.6 88 53.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.9e-09 68.2 139 41.0
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 7.2e-09 66.2 100 45.0
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 1.2e-08 65.5 165 42.4
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 4.7e-08 63.5 80 52.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.0e-08 62.8 89 50.6
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.8e-07 59.7 130 40.0
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 8.9e-07 59.3 94 47.9


User provided reference genes

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