Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 8.4e-177 624.8 721 100.0
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 2.5e-157 560.1 722 93.2
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 1.1e-147 528.1 719 92.1
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 1.6e-135 487.6 720 88.3
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 1.1e-128 464.9 720 88.2
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 1.9e-128 464.2 709 83.9
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 2.0e-125 454.1 725 85.1
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 6.5e-121 439.1 721 86.4
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 7.2e-120 435.6 721 86.5
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 9.4e-120 435.3 722 86.6
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 1.8e-118 431.0 723 85.6
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 1.8e-118 431.0 723 85.6
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 1.8e-118 431.0 725 80.7
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 3.6e-111 406.8 725 82.3
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 1.5e-56 225.3 724 67.1
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 1.4e-54 218.8 725 64.4
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 1.8e-54 218.4 715 65.3
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 2.4e-54 218.0 693 61.3
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 2.6e-53 214.5 700 66.9
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.6e-53 213.0 697 63.6
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 9.9e-53 212.6 697 63.6
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.7e-52 211.8 697 63.4
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 2.2e-52 211.5 715 60.1
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 4.9e-52 210.3 719 65.1
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 6.4e-52 209.9 694 65.1
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.1e-51 209.1 697 61.7
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 1.9e-51 208.4 694 59.8
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 9.3e-51 206.1 721 66.9
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.2e-50 205.7 697 61.4
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 1.6e-50 205.3 699 58.9
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 2.1e-50 204.9 707 63.1
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 4.6e-50 203.8 709 64.3
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 6.0e-50 203.4 700 59.4
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 6.0e-50 203.4 717 60.5
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 1.0e-49 202.6 725 67.2
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 1.3e-49 202.2 718 65.0
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 3.9e-49 200.7 721 66.7
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 5.1e-49 200.3 715 61.0
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 1.9e-48 198.4 715 60.8
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 7.3e-48 196.4 728 60.6
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 9.6e-48 196.1 693 54.5
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 4.8e-47 193.7 716 56.7
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 1.8e-46 191.8 693 68.7
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 1.2e-42 179.1 695 61.0
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 3.5e-42 177.6 225 48.4
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 4.6e-42 177.2 716 62.7
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 1.3e-41 175.6 225 49.8
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 2.3e-41 174.9 714 59.2
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 5.1e-41 173.7 717 60.1
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 1.1e-40 172.6 228 49.6
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.4e-40 169.9 196 52.6
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 4.8e-39 167.2 709 60.5
Gorai.012G029100 Gossypium raimondii HOM05D007057 ORTHO05D008878 4.8e-39 167.2 719 65.2
Dinv04346 Davidia involucrata HOM05D007057 ORTHO05D008878 1.8e-38 165.2 699 62.2
BcaC03g14701 Brassica carinata HOM05D007057 ORTHO05D008878 3.1e-38 164.5 106 90.6
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 4.0e-38 164.1 227 49.3
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 6.9e-38 163.3 716 61.6
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.6e-37 161.4 232 46.6
BcaC03g14699 Brassica carinata HOM05D007057 ORTHO05D008878 3.8e-36 157.5 102 90.2
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 6.0e-34 150.2 183 50.3
TWI75G1373 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 1.3e-33 149.1 722 61.8
Ah.04g158850 Amaranthus hybridus HOM05D007057 ORTHO05D008878 1.1e-30 139.4 725 59.6
AUR62000330 Chenopodium quinoa HOM05D007057 ORTHO05D008878 3.1e-30 137.9 695 61.0
Rhsim03G0265600 Rhododendron simsii HOM05D007057 ORTHO05D008878 7.6e-29 133.3 227 42.7
AUR62006672 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.7e-28 132.1 697 59.4
BcaB05g24109 Brassica carinata HOM05D007057 ORTHO05D008878 2.9e-28 131.3 106 79.2
Solyc04g056640.1 Solanum lycopersicum HOM05D007057 ORTHO05D008878 1.1e-27 129.4 227 42.7
Actinidia34764 Actinidia chinensis HOM05D007057 ORTHO05D008878 2.5e-27 128.3 685 60.4
Nitab4.5_0001857g0020 Nicotiana tabacum HOM05D007057 ORTHO05D008878 3.2e-27 127.9 228 40.4
Peaxi162Scf00976g00023 Petunia axillaris HOM05D007057 ORTHO05D008878 3.2e-27 127.9 196 44.9
Peaxi162Scf00006g00421 Petunia axillaris HOM05D007057 ORTHO05D008878 4.2e-27 127.5 196 44.9
Sopen04g025560 Solanum pennellii HOM05D007057 ORTHO05D008878 9.3e-27 126.3 186 46.2
PGSC0003DMG400010523 Solanum tuberosum HOM05D007057 ORTHO05D008878 4.6e-26 124.0 195 44.1
Nitab4.5_0000946g0060 Nicotiana tabacum HOM05D007057 ORTHO05D008878 7.9e-26 123.2 197 43.7
vmacro06001 Vaccinium macrocarpon HOM05D007057 ORTHO05D008878 7.9e-26 123.2 227 41.4
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 1.3e-25 122.5 166 50.6
DCAR_001923 Daucus carota HOM05D007057 ORTHO05D008878 1.8e-25 122.1 195 43.1
Cc09_g03450 Coffea canephora HOM05D007057 ORTHO05D008878 1.5e-24 119.0 195 43.1
TAR362G1011 Trochodendron aralioides HOM05D007057 ORTHO05D008878 1.9e-24 118.6 692 58.5
EL10Ac4g09982 Beta vulgaris HOM05D007057 ORTHO05D008878 2.5e-24 118.2 193 40.9
MSTRG.8219 Avicennia marina HOM05D007057 ORTHO05D008878 1.6e-23 115.5 230 37.8
Nn4g26683 Nelumbo nucifera HOM05D007057 ORTHO05D008878 3.7e-23 114.4 720 63.2
CAN.G217.2 Capsicum annuum HOM05D007057 ORTHO05D008878 6.3e-23 113.6 229 40.6
Oeu010152.2 Olea europaea HOM05D007057 ORTHO05D008878 5.3e-22 110.5 195 40.0
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 6.9e-22 110.2 569 67.3
BcaC03g14697 Brassica carinata HOM05D007057 ORTHO05D008878 3.4e-21 107.8 182 65.4
Aqoxy2G03299 Aquilegia oxysepala HOM05D007057 ORTHO05D008878 4.5e-21 107.5 703 60.6
Migut.L01029 Erythranthe guttata HOM05D007057 ORTHO05D008878 2.5e-19 101.7 197 38.6
Sc16g0010320 Simmondsia chinensis HOM05D007057 ORTHO05D008878 4.2e-19 100.9 695 60.9
Phvul.008G055400 Phaseolus vulgaris HOM05D007057 ORTHO05D008878 1.6e-18 99.0 237 43.5
CSS0018282 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 4.6e-18 97.4 210 39.0
CSS0040898 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 4.6e-18 97.4 210 39.0
ECA248G3256 Erigeron canadensis HOM05D007057 ORTHO05D008878 1.8e-17 95.5 222 37.8
HanXRQChr01g0025821 Helianthus annuus HOM05D007057 ORTHO05D008878 6.7e-17 93.6 189 39.7
Lsat_1_v5_gn_1_58361 Lactuca sativa HOM05D007057 ORTHO05D008878 6.7e-17 93.6 195 39.5
CSS0040779 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 1.9e-16 92.0 209 37.8
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 2.5e-16 91.7 184 41.3
PSO675G4505 Papaver somniferum HOM05D007057 ORTHO05D008878 9.1e-14 83.2 192 39.6
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 9.1e-14 83.2 198 35.9
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 1.5e-13 82.4 191 38.7
SalBow6G0986 Salvia bowleyana HOM05D007057 ORTHO05D008878 3.8e-12 77.8 152 39.5
MBI08_g39972_MAGBIO Magnolia biondii HOM05D007057 ORTHO05D008878 1.9e-11 75.5 191 35.6
PGR031G2526 Punica granatum HOM05D000053 ORTHO05D000448 5.7e-08 63.9 180 31.7
Ciclev10024479m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.3e-07 62.8 108 37.0
arahy.Tifrunner.gnm1.ann1.A1HR66 Arachis hypogaea HOM05D000094 ORTHO05D003883 1.7e-07 62.4 91 40.7
arahy.Tifrunner.gnm1.ann1.SDCR6H Arachis hypogaea HOM05D000094 ORTHO05D003883 1.7e-07 62.4 91 40.7
ATR0824G263 Amborella trichopoda HOM05D007057 ORTHO05D008878 2.8e-07 61.6 188 33.5
Os02g0603100 Oryza sativa ssp. japonica HOM05D007057 ORTHO05D008878 3.7e-07 61.2 217 31.8
AUR62000327 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.1e-06 59.7 54 55.6
Manes.07G072338 Manihot esculenta HOM05D000033 ORTHO05D002493 1.8e-06 58.9 66 47.0
Cc00_g15340 Coffea canephora HOM05D020204 ORTHO05D000010 2.4e-06 58.5 73 39.7
FvH4_5g14410 Fragaria vesca HOM05D000094 ORTHO05D003883 2.4e-06 58.5 65 49.2
FAN18G3591 Fragaria x ananassa HOM05D000094 ORTHO05D003883 2.4e-06 58.5 65 49.2
Gohir.A02G155000 Gossypium hirsutum HOM05D000033 ORTHO05D002493 3.1e-06 58.2 117 31.6
VMungo1309G2047 Vigna mungo HOM05D000094 ORTHO05D004969 3.1e-06 58.2 74 41.9
Zm00001eb184050 Zea mays HOM05D007057 ORTHO05D008878 3.1e-06 58.2 230 32.2
Sopen08g020100 Solanum pennellii HOM05D000029 ORTHO05D001072 4.1e-06 57.8 77 42.9
Sed0013550 Sechium edule HOM05D000071 ORTHO05D000029 5.3e-06 57.4 70 45.7
arahy.Tifrunner.gnm1.ann1.7J08Q6 Arachis hypogaea HOM05D000570 ORTHO05D005344 6.9e-06 57.0 73 41.1
Gohir.D03G025700 Gossypium hirsutum HOM05D000033 ORTHO05D002493 6.9e-06 57.0 117 31.6
TPR.G6258 Trifolium pratense HOM05D000071 ORTHO05D000029 6.9e-06 57.0 68 47.1
AUR62032303 Chenopodium quinoa HOM05D000053 ORTHO05D000035 9.1e-06 56.6 180 28.3
TPR.G6238 Trifolium pratense HOM05D000071 ORTHO05D000029 9.1e-06 56.6 68 47.1


User provided reference genes

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