Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 4.5e-158 561.2 287 100.0
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 5.5e-148 527.7 286 93.4
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 1.1e-140 503.4 288 88.2
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 1.0e-133 480.3 287 85.4
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 2.9e-133 478.8 287 85.4
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 2.9e-133 478.8 287 85.4
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 1.5e-132 476.5 287 84.3
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 1.2e-131 473.4 287 82.6
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 1.6e-131 473.0 287 84.0
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 3.6e-131 471.9 248 96.4
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 4.7e-131 471.5 287 80.8
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 5.8e-129 464.5 268 86.9
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 4.1e-127 458.4 268 85.8
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 8.9e-114 414.1 290 72.4
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 1.9e-103 379.8 291 69.1
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 7.3e-100 367.9 297 65.7
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 4.7e-99 365.2 292 64.4
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 1.1e-98 364.0 297 65.3
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.4e-98 363.6 254 72.0
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.4e-98 363.6 305 63.3
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.8e-98 363.2 299 64.2
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 3.1e-98 362.5 264 70.1
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 5.3e-98 361.7 266 68.8
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 6.9e-98 361.3 290 65.5
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 1.2e-97 360.5 268 68.3
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 1.5e-97 360.1 271 69.7
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 2.0e-97 359.8 254 70.1
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 2.0e-97 359.8 255 70.6
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 4.4e-97 358.6 261 70.1
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 2.2e-96 356.3 285 63.5
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.8e-96 355.5 301 64.1
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.9e-95 353.2 322 60.2
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 9.3e-95 350.9 305 62.6
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.2e-94 350.5 313 62.0
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 2.1e-94 349.7 266 66.2
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 4.6e-94 348.6 262 67.6
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.0e-93 347.4 295 61.4
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 1.0e-93 347.4 263 66.9
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 2.3e-93 346.3 282 63.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 3.9e-93 345.5 257 67.7
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 8.7e-93 344.4 235 70.6
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 1.1e-92 344.0 257 67.3
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.9e-92 343.2 255 66.7
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 2.5e-92 342.8 256 66.4
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 4.3e-92 342.0 300 62.7
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 4.3e-92 342.0 286 63.6
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 4.3e-92 342.0 268 67.2
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 5.6e-92 341.7 296 61.1
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 7.3e-92 341.3 232 72.8
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 7.3e-92 341.3 263 66.2
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 1.6e-91 340.1 256 66.8
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 2.1e-91 339.7 255 67.5
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 2.8e-91 339.3 255 67.5
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 2.8e-91 339.3 243 66.7
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 2.8e-91 339.3 288 61.1
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 6.2e-91 338.2 257 66.1
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 6.2e-91 338.2 257 66.1
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 8.1e-91 337.8 262 66.0
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 8.1e-91 337.8 292 60.3
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.4e-90 337.0 258 65.1
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 9.0e-90 334.3 304 60.5
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 4.5e-89 332.0 254 66.1
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 4.5e-89 332.0 262 64.1
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 9.9e-89 330.9 280 62.1
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 1.3e-88 330.5 227 72.2
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 1.7e-88 330.1 300 55.7
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 2.2e-88 329.7 309 58.9
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 2.9e-88 329.3 302 55.0
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.8e-88 328.9 280 61.8
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 8.4e-88 327.8 259 65.3
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 1.1e-87 327.4 294 59.2
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 1.9e-87 326.6 248 64.5
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 1.9e-87 326.6 269 63.2
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 3.2e-87 325.9 256 62.1
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 4.2e-87 325.5 248 66.1
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 4.2e-87 325.5 254 64.6
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 7.1e-87 324.7 258 64.3
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 3.0e-85 319.3 233 68.7
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 3.9e-85 318.9 242 66.1
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 8.7e-85 317.8 301 57.5
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.3e-83 313.9 285 56.8
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 3.7e-83 312.4 258 62.8
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 6.2e-83 311.6 257 61.9
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 3.1e-82 309.3 224 69.2
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 1.5e-81 307.0 240 65.8
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 2.0e-81 306.6 226 68.1
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 3.4e-81 305.8 223 68.6
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 3.4e-81 305.8 278 57.9
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 4.2e-79 298.9 290 57.2
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 4.6e-78 295.4 206 69.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.5e-76 290.4 291 56.7
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 5.6e-76 288.5 236 63.1
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 4.8e-75 285.4 257 60.7
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.1e-74 284.3 288 54.9
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 1.1e-74 284.3 254 60.6
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.4e-74 283.1 249 60.6
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 6.9e-74 281.6 249 60.2
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.5e-73 280.4 249 60.2
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 5.8e-73 278.5 280 53.9
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 6.0e-70 268.5 244 56.1
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.3e-67 260.8 179 72.6
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 1.1e-66 257.7 237 53.6
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 6.9e-66 255.0 253 51.4
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 7.2e-63 245.0 227 59.5
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 2.7e-62 243.0 229 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 1.1e-58 231.1 243 52.3
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 4.7e-54 215.7 252 47.2
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 4.8e-51 205.7 178 58.4
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.5e-49 200.7 148 69.6
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 3.8e-48 196.1 240 45.0
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 1.4e-26 124.4 223 36.3
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 2.2e-19 100.5 86 58.1
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 1.8e-18 97.4 224 31.7
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 2.4e-18 97.1 121 46.3
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 2.3e-16 90.5 100 49.0
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 2.3e-16 90.5 100 49.0
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 6.8e-13 79.0 229 30.6


User provided reference genes

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