Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 7.7e-43 176.8 92 100.0
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.9e-41 172.2 92 96.7
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 4.2e-41 171.0 92 95.7
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 4.2e-41 171.0 92 94.6
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 5.5e-41 170.6 92 93.5
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 5.5e-41 170.6 92 95.7
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 7.2e-41 170.2 92 92.4
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 7.2e-41 170.2 92 92.4
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 7.2e-41 170.2 92 92.4
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 7.2e-41 170.2 92 94.6
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 2.7e-40 168.3 92 91.3
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 4.7e-40 167.5 92 92.4
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 4.7e-40 167.5 92 92.4
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.5e-38 162.5 92 89.1
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 3.0e-31 138.3 92 81.5
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.5e-30 136.0 73 94.5
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 7.0e-28 127.1 92 76.1
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.7e-26 122.5 86 69.8
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.7e-26 122.5 86 69.8
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.7e-26 122.5 86 69.8
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 3.8e-26 121.3 84 71.4
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 1.5e-25 119.4 84 70.2
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 1.5e-25 119.4 84 70.2
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.9e-25 119.0 90 65.6
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 2.5e-25 118.6 86 67.4
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 2.5e-25 118.6 86 67.4
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 2.5e-25 118.6 84 70.2
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 3.2e-25 118.2 85 68.2
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.2e-25 117.9 84 67.9
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 5.5e-25 117.5 86 67.4
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 9.4e-25 116.7 84 67.9
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.2e-24 116.3 91 65.9
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.2e-24 116.3 90 63.3
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 1.2e-24 116.3 84 69.0
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.6e-24 115.9 86 67.4
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.6e-24 115.9 86 67.4
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 2.1e-24 115.5 84 66.7
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 2.1e-24 115.5 84 66.7
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 2.1e-24 115.5 90 62.2
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 2.7e-24 115.2 84 66.7
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 3.6e-24 114.8 84 65.5
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 4.7e-24 114.4 91 64.8
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 4.7e-24 114.4 82 68.3
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 4.7e-24 114.4 82 68.3
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 1.4e-23 112.8 85 64.7
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 1.4e-23 112.8 84 65.5
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.4e-23 112.8 84 65.5
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.8e-23 112.5 81 69.1
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 1.8e-23 112.5 84 66.7
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.3e-23 112.1 85 64.7
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 2.3e-23 112.1 84 65.5
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 2.3e-23 112.1 82 69.5
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.0e-23 111.7 81 69.1
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 3.0e-23 111.7 90 61.1
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 3.0e-23 111.7 87 63.2
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 4.0e-23 111.3 84 65.5
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 4.0e-23 111.3 86 62.8
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 5.2e-23 110.9 84 65.5
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 5.2e-23 110.9 86 62.8
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 5.2e-23 110.9 87 66.7
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 5.2e-23 110.9 90 60.0
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 5.2e-23 110.9 88 62.5
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 6.8e-23 110.5 84 60.7
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 8.8e-23 110.2 80 68.8
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.2e-22 109.8 84 63.1
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 2.6e-22 108.6 84 63.1
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.6e-22 108.6 84 64.3
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 2.6e-22 108.6 82 67.1
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 3.4e-22 108.2 84 64.3
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 3.4e-22 108.2 82 64.6
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 4.4e-22 107.8 84 64.3
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 4.4e-22 107.8 84 63.1
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 4.4e-22 107.8 84 63.1
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 5.7e-22 107.5 84 60.7
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 5.7e-22 107.5 80 67.5
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 7.5e-22 107.1 84 61.9
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 7.5e-22 107.1 84 60.7
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 7.5e-22 107.1 82 64.6
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 7.5e-22 107.1 82 64.6
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 7.5e-22 107.1 84 60.7
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 9.8e-22 106.7 85 62.4
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 1.3e-21 106.3 84 61.9
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 2.2e-21 105.5 84 61.9
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 2.8e-21 105.1 87 63.2
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 3.7e-21 104.8 84 58.3
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 62.2
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.1e-20 103.2 84 59.5
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.1e-20 103.2 84 57.1
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.4e-20 102.8 81 59.3
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.4e-20 102.8 81 60.5
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.4e-20 102.8 84 60.7
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 1.8e-20 102.4 81 59.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 1.8e-20 102.4 80 63.8
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 3.1e-20 101.7 84 58.3
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 3.1e-20 101.7 84 58.3
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 7.0e-20 100.5 84 57.1
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 9.1e-20 100.1 83 57.8
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 9.1e-20 100.1 82 57.3
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.2e-19 99.8 84 57.1
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 1.6e-19 99.4 78 62.8
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 2.0e-19 99.0 72 66.7
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 2.0e-19 99.0 85 54.1
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 3.5e-19 98.2 71 67.6
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 4.5e-19 97.8 81 61.7
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 5.9e-19 97.4 82 57.3
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 2.2e-18 95.5 82 54.9
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 3.8e-18 94.7 84 52.4
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.5e-17 92.8 82 53.7
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 7.2e-17 90.5 87 50.6
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 3.0e-15 85.1 77 51.9
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.8e-13 78.6 58 63.8
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 4.9e-13 77.8 67 58.2
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 4.1e-12 74.7 85 44.7
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 2.0e-11 72.4 49 69.4
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 7.8e-11 70.5 82 47.6
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.7e-10 69.3 58 62.1
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 5.0e-10 67.8 58 58.6
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 1.5e-09 66.2 58 56.9
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 7.3e-09 63.9 66 53.0
C02p23080 Brassica napus HOM05D046150 ORTHO05D042944 1.2e-08 63.2 31 93.5
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 1.2e-08 63.2 47 63.8
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 2.3e-07 58.9 58 51.7
BolC2t08450H Brassica oleracea HOM05D046150 ORTHO05D042944 3.0e-07 58.5 31 87.1
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.5e-06 56.2 45 55.6
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 9.8e-06 53.5 46 52.2
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 9.8e-06 53.5 46 52.2


User provided reference genes

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