Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.6e-157 559.3 260 100.0
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-154 549.7 259 97.7
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.3e-151 539.7 260 96.2
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.8e-145 517.3 260 93.5
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.0e-144 515.8 260 92.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.7e-143 512.7 256 91.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.9e-140 501.9 254 90.2
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.9e-139 499.2 259 89.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 5.7e-136 487.6 256 86.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 5.7e-136 487.6 246 90.2
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 9.8e-136 486.9 256 86.7
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 9.8e-136 486.9 256 86.7
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 8.3e-135 483.8 256 85.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 2.4e-134 482.3 256 85.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 7.0e-134 480.7 256 84.8
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.0e-132 476.9 261 85.8
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 3.0e-132 475.3 261 85.4
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 3.0e-132 475.3 261 85.8
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-131 473.4 260 84.2
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 4.3e-131 471.5 261 85.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 4.3e-131 471.5 261 85.4
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.1e-130 469.2 253 83.4
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.8e-130 468.8 253 85.0
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.8e-130 468.8 243 87.2
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 8.0e-130 467.2 258 82.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.0e-129 466.8 255 83.5
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 5.2e-129 464.5 256 82.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 6.8e-129 464.2 257 81.7
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 6.8e-129 464.2 254 82.3
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 8.9e-129 463.8 254 81.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-128 463.4 256 81.6
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.5e-128 463.0 256 81.6
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.5e-128 463.0 258 81.8
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.0e-128 462.6 255 82.4
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 7.5e-128 460.7 257 82.1
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.9e-127 458.8 256 81.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.9e-127 458.8 253 81.8
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 6.4e-127 457.6 255 80.8
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 6.4e-127 457.6 264 79.9
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.1e-126 456.8 256 80.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.4e-126 456.4 258 82.2
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.4e-126 456.4 249 82.7
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.4e-126 456.4 243 84.0
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.9e-126 456.1 257 80.9
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.9e-126 456.1 254 80.7
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 4.1e-126 454.9 261 80.8
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.4e-126 454.5 241 84.2
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 5.4e-126 454.5 254 81.9
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 7.0e-126 454.1 253 81.0
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.6e-125 453.0 241 83.8
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.0e-125 452.6 259 79.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.7e-125 452.2 241 83.8
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 3.5e-125 451.8 261 80.5
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.6e-125 451.4 253 81.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 7.8e-125 450.7 253 80.2
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.0e-124 450.3 256 78.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.3e-124 449.9 252 80.6
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.0e-124 448.7 255 79.2
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.0e-124 448.7 236 85.2
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.9e-124 448.4 255 79.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.0e-124 448.0 255 79.2
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 5.0e-124 448.0 244 81.1
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.9e-123 446.0 254 81.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 3.3e-123 445.3 251 79.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 5.6e-123 444.5 251 79.7
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.2e-122 443.4 254 78.0
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 4.0e-121 438.3 238 81.5
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.2e-121 438.0 250 78.8
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 6.8e-121 437.6 251 76.5
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.8e-121 437.6 250 78.8
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.0e-120 436.0 250 78.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.0e-120 436.0 256 75.8
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.4e-120 435.3 246 76.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.4e-120 434.9 253 75.5
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.4e-120 434.9 241 79.3
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 7.5e-120 434.1 252 76.6
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 7.5e-120 434.1 253 76.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 9.8e-120 433.7 256 75.4
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.3e-119 433.3 231 82.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.7e-119 433.0 236 79.2
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.7e-119 433.0 253 76.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.2e-119 432.6 232 81.9
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.9e-119 432.2 256 77.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.9e-119 432.2 240 77.9
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 3.7e-119 431.8 253 76.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.4e-118 429.9 249 76.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.9e-118 429.5 246 79.3
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.9e-118 429.5 253 75.9
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.4e-118 429.1 253 75.5
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.4e-118 429.1 253 74.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.4e-118 429.1 258 76.0
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-118 428.7 251 74.5
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-118 428.7 249 75.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-118 428.7 245 76.3
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 7.1e-118 427.6 239 77.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 7.1e-118 427.6 246 78.0
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 9.2e-118 427.2 233 79.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.2e-117 426.8 233 79.0
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.6e-117 426.4 239 77.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.1e-117 426.0 250 75.6
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.7e-117 425.6 245 76.3
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.5e-117 425.2 254 73.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.3e-116 423.3 232 80.2
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.3e-116 423.3 253 74.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-116 423.3 234 77.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.7e-116 422.9 235 78.7
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.3e-116 422.5 252 75.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.3e-116 422.5 235 78.7
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 3.9e-116 421.8 248 75.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 5.1e-116 421.4 232 79.7
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 6.6e-116 421.0 256 72.3
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 8.6e-116 420.6 252 72.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.1e-115 420.2 245 75.5
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-115 419.9 253 75.1
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.5e-115 419.9 238 76.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.5e-115 419.1 251 74.9
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 3.3e-115 418.7 243 74.1
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 3.3e-115 418.7 252 72.2
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 5.6e-115 417.9 244 75.8
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.6e-115 417.9 253 73.5
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 5.6e-115 417.9 242 74.8
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.3e-115 417.5 246 75.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 9.5e-115 417.2 253 73.1
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.6e-114 416.4 253 72.7
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.8e-114 415.6 253 72.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.6e-114 415.2 251 73.3
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.6e-114 415.2 247 73.3
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 8.1e-114 414.1 255 70.6
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.8e-113 412.9 247 74.5
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-113 412.5 253 72.7
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-113 412.5 253 73.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 6.8e-113 411.0 241 75.5
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 4.4e-112 408.3 251 74.1
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.8e-112 407.9 228 78.5
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.4e-110 403.3 226 77.9
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.1e-109 399.4 235 77.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-108 396.7 241 71.0
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.2e-106 390.2 211 84.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.1e-105 387.1 230 73.9
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.8e-105 386.3 226 74.8
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.0e-105 385.2 245 69.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.9e-102 376.3 229 71.2
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-99 367.1 250 66.0
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 5.8e-96 354.8 243 63.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 7.6e-96 354.4 230 65.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 9.9e-96 354.0 241 65.6
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 3.2e-94 349.0 223 68.6
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 5.4e-94 348.2 248 62.9
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 3.5e-93 345.5 257 62.6
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.0e-92 342.4 226 65.9
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.6e-90 336.7 237 60.8
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.3e-83 312.0 254 59.1
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 9.6e-83 310.8 182 79.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-78 297.0 160 80.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.6e-77 292.0 156 80.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.0e-60 236.1 178 59.6
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.0e-56 223.4 250 46.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 7.7e-56 221.5 218 49.5
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.9e-47 193.0 209 48.3
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.5e-40 169.5 96 79.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 2.7e-32 143.3 121 60.3
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 6.1e-29 132.1 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.1e-25 121.3 141 46.8
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 4.7e-13 79.3 51 60.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 8.9e-12 75.1 64 54.7


User provided reference genes

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