Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.0e-300 1035.0 538 100.0
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.4e-290 1001.5 540 96.5
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.3e-280 968.4 553 92.4
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.7e-267 925.6 548 88.5
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 4.1e-261 904.4 593 81.3
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 5.5e-258 894.0 548 86.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.1e-257 892.1 547 85.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.6e-257 891.3 548 85.8
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.6e-257 891.3 548 85.8
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.7e-257 891.0 548 85.9
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.1e-257 890.6 550 86.0
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.2e-254 882.1 560 84.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 4.5e-236 821.2 517 78.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 6.8e-200 701.0 510 67.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.5e-199 699.9 510 67.5
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 7.6e-199 697.6 510 69.8
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.8e-198 695.3 510 67.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.7e-196 689.1 511 69.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 3.9e-195 685.3 508 71.7
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 6.9e-192 674.5 508 66.5
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 4.9e-190 668.3 514 65.4
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 8.4e-190 667.5 513 64.9
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.9e-189 666.4 508 66.5
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 9.3e-189 664.1 514 64.0
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 9.3e-189 664.1 513 66.7
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 3.5e-188 662.1 509 66.8
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 7.8e-188 661.0 505 66.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.8e-188 661.0 512 64.1
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.0e-187 660.6 509 64.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.3e-187 659.4 513 67.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.1e-186 657.1 511 64.2
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 2.5e-186 656.0 516 63.2
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.3e-186 655.6 512 69.9
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 4.3e-186 655.2 513 68.2
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 5.6e-186 654.8 510 63.9
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 9.6e-186 654.1 518 64.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.6e-185 653.3 507 65.5
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 2.1e-185 652.9 503 63.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 2.8e-185 652.5 507 66.7
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 6.2e-185 651.4 514 63.2
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.1e-184 650.6 503 63.2
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.4e-184 650.2 503 64.0
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 6.9e-184 647.9 510 66.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.9e-184 647.9 515 64.3
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.5e-183 646.7 514 63.8
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.0e-183 646.4 514 64.2
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 4.5e-183 645.2 515 64.1
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.3e-182 643.7 512 64.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 3.8e-182 642.1 517 62.9
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 4.9e-182 641.7 503 62.6
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 8.4e-182 641.0 504 64.7
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.4e-181 640.2 565 59.3
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.4e-181 639.4 512 62.9
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.2e-181 638.6 515 63.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.6e-180 636.7 497 65.0
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.9e-180 634.4 513 63.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 3.0e-179 632.5 511 62.0
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.9e-179 632.1 513 64.5
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.7e-179 630.9 513 64.1
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.1e-178 630.6 513 64.3
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 4.8e-177 625.2 514 63.2
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-176 623.6 513 63.2
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.1e-176 622.5 510 61.4
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 2.6e-175 619.4 518 59.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.7e-174 616.7 515 59.8
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.2e-174 616.3 517 60.3
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.8e-171 606.7 536 59.1
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.8e-171 606.7 513 59.8
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.8e-171 606.7 588 58.0
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 3.0e-171 605.9 508 59.8
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 4.3e-170 602.1 509 59.5
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.4e-168 596.3 511 59.5
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.3e-168 595.1 508 61.8
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 2.9e-166 589.3 526 57.2
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.0e-166 588.6 522 56.7
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.3e-163 580.5 384 72.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 6.7e-163 578.2 524 60.9
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 6.7e-163 578.2 522 55.9
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 3.4e-159 565.8 528 60.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 5.0e-158 562.0 514 54.1
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.9e-157 560.1 505 56.2
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.7e-150 537.0 470 57.9
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 2.1e-148 530.0 503 54.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.8e-147 526.9 472 59.1
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.3e-147 526.6 545 54.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 4.4e-146 522.3 467 58.0
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 9.7e-146 521.2 355 70.4
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.8e-139 500.4 396 62.6
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.9e-139 499.2 519 50.3
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 2.0e-138 496.9 343 69.4
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 3.2e-125 453.0 269 90.0
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.2e-113 413.7 370 58.4
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.3e-105 387.9 465 51.8
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 3.2e-104 383.3 270 70.4
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 6.0e-103 379.0 527 41.0
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 8.6e-102 375.2 507 44.8
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 4.0e-99 366.3 524 40.1
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.1e-94 349.4 562 38.6
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.4e-88 330.5 567 38.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 6.8e-83 312.4 246 62.2
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.0e-82 310.8 244 63.1
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-79 301.6 268 55.6
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.0e-79 299.3 492 37.6
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.1e-67 260.4 213 63.4
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.9e-66 255.4 260 45.8
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.2e-65 254.2 244 57.4
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 3.8e-65 253.4 185 67.0
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.0e-62 245.4 469 40.1
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.3e-61 240.4 213 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.9e-54 216.9 248 46.4
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.6e-53 212.2 212 54.2
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.1e-52 211.1 523 26.8
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 2.2e-41 174.5 189 48.7
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.6e-39 168.3 157 52.9
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.7e-39 167.5 310 36.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-38 165.6 256 43.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.9e-38 163.7 180 53.3
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 2.0e-34 151.4 527 27.7
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 2.0e-34 151.4 266 40.2
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.3e-30 137.9 82 78.0
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.9e-24 118.2 162 42.0
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 2.3e-22 111.3 66 69.7
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.4e-19 101.3 67 61.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 9.1e-19 99.4 127 48.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.9e-16 91.7 179 35.8
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.5e-16 90.1 121 41.3
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.2e-15 89.0 113 45.1
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 4.8e-12 77.0 52 63.5


User provided reference genes

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