Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 0.0e+00 2332.0 1240 100.0
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 0.0e+00 2097.0 1264 90.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 0.0e+00 1851.6 1262 82.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 0.0e+00 1707.2 1260 76.6
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 0.0e+00 1664.4 1260 76.2
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 0.0e+00 1633.2 1202 76.0
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 1395.6 1179 69.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 0.0e+00 1358.2 1199 67.0
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 1350.1 1199 66.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 0.0e+00 1349.0 1199 66.7
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 0.0e+00 1340.1 1288 62.1
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 0.0e+00 1094.0 1305 54.6
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 8.6e-214 748.4 1393 41.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.9e-209 732.6 1390 40.9
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 6.4e-209 732.3 1415 41.3
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.4e-208 730.3 1411 41.5
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.4e-208 730.3 1415 41.2
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.1e-207 727.2 1376 40.7
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.0e-207 725.7 1376 40.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.2e-202 711.4 1438 40.1
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 3.4e-202 709.9 1376 40.4
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.7e-201 707.6 1437 39.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.0e-198 698.4 1443 40.2
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.3e-197 693.0 1443 40.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 9.6e-197 691.8 1474 39.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.3e-195 686.0 1421 38.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.2e-194 684.9 1406 39.5
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.0e-194 684.1 1427 39.5
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 9.3e-192 675.2 1177 42.1
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.1e-189 668.3 1438 38.5
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 8.1e-188 662.1 1399 40.2
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-183 648.3 1352 38.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 7.9e-183 645.6 1353 39.0
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-180 638.3 1295 39.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.8e-180 637.1 1336 39.2
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.8e-177 626.7 1446 36.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.9e-176 624.4 1359 38.6
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 3.2e-176 623.6 1409 38.0
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.1e-176 622.5 1179 40.4
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 8.7e-174 615.5 1338 38.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.6e-173 612.8 1336 38.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.3e-172 611.7 1228 39.6
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.6e-172 611.3 1363 37.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.6e-172 611.3 1339 38.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.1e-171 608.6 1237 39.4
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.1e-171 607.1 1357 37.4
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 4.0e-171 606.7 1230 39.6
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.0e-171 606.7 1424 37.5
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.2e-169 600.9 477 70.9
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.2e-169 600.9 1262 38.8
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.9e-169 599.7 1271 39.7
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 6.5e-169 599.4 1278 39.6
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.2e-168 596.7 1215 40.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.5e-168 596.3 1426 37.5
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 3.5e-167 593.6 1328 37.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 3.5e-167 593.6 1328 37.7
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 7.9e-167 592.4 1359 36.6
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-166 591.7 1351 38.1
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.8e-166 591.3 1286 38.2
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 5.1e-166 589.7 1285 37.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 5.7e-165 586.3 1240 39.2
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.8e-164 583.9 1226 38.7
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 8.2e-164 582.4 1287 36.8
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.1e-163 582.0 1351 37.1
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.4e-163 581.6 1226 39.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.2e-162 578.6 1251 38.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.5e-162 578.2 1368 36.7
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.9e-161 573.9 1187 38.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.5e-161 572.8 1370 36.1
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 8.5e-161 572.4 1184 39.2
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 8.5e-161 572.4 1200 39.0
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.3e-158 564.3 1248 37.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.7e-156 558.1 1393 37.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.0e-154 551.2 1329 36.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.5e-154 550.1 1188 37.5
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.1e-152 545.4 1313 37.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.2e-152 543.9 1318 37.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 7.2e-152 542.7 1222 37.2
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 1.8e-150 538.1 482 65.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 9.7e-149 532.3 1257 37.2
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 4.8e-148 530.0 1246 37.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.8e-147 528.1 1269 36.4
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.8e-147 528.1 1349 34.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.1e-147 526.9 1329 34.3
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.7e-146 522.7 1372 34.3
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.2e-145 521.2 409 71.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 4.2e-144 516.9 1174 36.8
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.2e-143 515.4 1163 37.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.0e-137 495.7 1323 34.7
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.6e-135 487.3 1327 33.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 3.0e-134 484.2 1247 35.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.6e-133 481.1 974 37.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 5.9e-130 469.9 1115 36.0
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 5.5e-128 463.4 1197 36.0
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 7.5e-125 453.0 1513 32.1
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.4e-123 448.7 1119 35.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 7.0e-123 446.4 1358 33.9
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.0e-121 442.6 1215 34.6
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 7.8e-114 416.4 1326 33.5
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.6e-113 412.9 827 39.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.5e-112 409.5 1143 34.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 8.3e-108 396.4 1000 35.7
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.0e-105 387.1 844 37.2
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.1e-102 377.9 1178 33.2
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.4e-99 368.2 570 46.5
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.3e-97 361.7 576 45.8
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 7.3e-88 330.1 849 34.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.8e-85 320.5 660 38.2
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 3.8e-84 317.8 434 49.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.5e-80 305.1 917 30.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 4.8e-79 300.8 473 45.5
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.8e-71 275.0 620 38.4
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.2e-71 273.9 590 39.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-69 269.2 468 43.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 3.4e-69 268.1 998 29.7
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 6.4e-68 263.8 765 31.6
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 6.7e-65 253.8 442 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.5e-64 252.7 676 33.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 8.4e-60 236.9 608 34.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 5.9e-45 187.6 310 40.6
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 3.8e-44 184.9 264 50.4
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.7e-39 169.5 160 53.8
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 3.1e-38 165.2 506 34.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 5.5e-35 154.5 341 36.1
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.3e-33 149.1 183 50.3
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.0e-33 148.7 265 46.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.7e-33 147.5 233 40.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.0e-32 146.0 493 28.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-30 139.0 291 35.7
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 4.1e-30 138.3 145 46.9
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.6e-26 125.2 263 45.6
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.5e-24 119.8 136 53.7
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 6.3e-23 114.4 330 34.2
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 6.3e-23 114.4 330 34.2
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.2e-20 105.9 580 26.4
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.0e-20 104.8 523 25.4
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.8e-15 88.2 160 35.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-13 82.0 115 59.1
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 8.5e-12 77.4 521 25.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-10 73.6 138 38.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.0e-10 70.9 61 52.5
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.0e-09 70.5 630 24.4
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.3e-09 69.3 65 56.9
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.8e-08 63.9 69 42.0


User provided reference genes

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