Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.5e-127 459.5 232 100.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 7.0e-109 397.5 211 95.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.8e-102 375.6 211 91.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 7.0e-101 370.9 212 90.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.6e-100 369.8 212 91.5
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.9e-99 365.5 211 91.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 5.0e-99 364.8 211 89.6
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.6e-99 364.0 237 82.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.5e-98 362.5 226 84.5
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.2e-98 362.1 212 88.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.1e-97 357.8 211 88.2
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 6.1e-97 357.8 226 84.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 8.0e-97 357.5 210 89.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-96 357.1 212 87.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-96 355.9 212 87.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.3e-96 355.9 212 87.3
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.0e-96 355.1 212 87.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-95 353.6 211 87.2
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.6e-89 332.0 213 82.6
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.6e-87 325.9 198 85.9
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.8e-79 297.4 204 74.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.7e-78 296.6 204 74.5
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.4e-77 291.6 204 73.5
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 5.6e-74 281.6 214 70.6
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.6e-73 280.0 202 70.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.1e-73 279.6 196 74.5
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 4.0e-72 275.4 203 69.5
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 9.9e-71 270.8 204 68.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.9e-70 269.2 194 70.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.7e-70 268.9 187 72.2
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.4e-69 266.2 187 70.6
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-69 265.8 217 67.7
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.2e-69 265.8 210 67.1
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 4.1e-69 265.4 208 69.2
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 9.2e-69 264.2 210 67.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.6e-68 263.5 211 66.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.5e-68 262.3 190 72.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.6e-68 261.9 186 72.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.6e-68 261.9 205 66.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.0e-68 261.5 231 62.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 7.8e-68 261.2 207 69.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.0e-67 260.8 208 67.8
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-67 260.4 191 70.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.3e-67 259.6 213 66.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.3e-67 259.6 190 70.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.9e-67 258.8 185 71.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.1e-67 258.5 204 68.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.6e-67 257.7 195 71.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.5e-66 256.1 253 57.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.3e-66 255.4 193 69.9
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.3e-66 255.4 205 65.4
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.5e-66 254.2 200 66.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.5e-66 254.2 205 64.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.6e-65 253.4 216 64.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.6e-65 253.4 196 69.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.6e-65 253.4 218 65.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.1e-65 253.1 199 67.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-65 253.1 198 70.2
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 4.7e-65 251.9 196 69.9
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 4.7e-65 251.9 196 69.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 6.2e-65 251.5 201 69.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 6.2e-65 251.5 152 81.6
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.1e-64 250.8 207 69.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.1e-64 250.8 209 65.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.4e-64 250.4 172 75.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.4e-64 250.4 216 63.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-64 250.4 216 63.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-64 250.4 216 63.9
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.4e-64 249.6 207 68.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.4e-64 249.6 157 78.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.1e-64 249.2 184 71.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.1e-64 249.2 150 82.0
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 5.2e-64 248.4 162 75.9
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.2e-64 248.4 208 64.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.8e-64 248.1 154 81.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.8e-64 248.1 155 79.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 6.8e-64 248.1 196 66.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 6.8e-64 248.1 188 68.6
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.9e-64 247.7 216 63.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.5e-63 246.9 155 77.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-63 245.7 210 66.2
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.4e-63 245.4 210 66.7
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.4e-63 245.4 155 78.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 4.4e-63 245.4 212 65.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.9e-63 244.2 207 66.2
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.9e-63 244.2 207 66.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 9.9e-63 244.2 157 76.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.7e-62 243.4 211 63.5
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.4e-61 240.4 214 65.9
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-61 240.0 191 68.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.4e-61 239.6 153 75.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.2e-61 239.2 221 62.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.2e-60 237.3 156 73.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.7e-60 236.1 195 65.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.5e-60 235.7 188 66.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.0e-60 235.0 195 65.1
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.8e-60 234.6 195 64.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.5e-58 230.3 151 77.5
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.6e-58 227.6 153 72.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.6e-57 226.9 197 63.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 6.2e-57 224.9 220 55.9
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-56 223.8 226 58.8
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.4e-56 223.8 199 60.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.0e-56 222.2 163 70.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 9.0e-56 221.1 209 59.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.6e-55 218.0 193 61.1
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.4e-53 213.0 120 85.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.4e-53 211.8 210 56.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.2e-52 210.7 186 65.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-52 210.7 147 74.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.0e-51 207.6 209 56.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-51 207.2 192 59.4
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.0e-51 206.1 280 45.7
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.9e-51 205.7 214 54.2
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 8.7e-51 204.5 189 57.1
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.3e-49 200.7 175 62.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.1e-48 197.6 158 63.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.1e-48 197.6 156 64.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.3e-46 190.7 146 67.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-45 187.6 214 51.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.9e-45 186.8 101 90.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.2e-44 184.1 149 66.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 6.0e-44 181.8 127 70.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.9e-43 179.1 212 50.9
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.9e-43 179.1 212 50.9
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 5.1e-43 178.7 120 72.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-41 173.7 219 50.7
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 9.9e-39 164.5 216 48.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.5e-37 158.7 93 79.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.9e-35 152.5 106 67.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 6.7e-35 151.8 130 56.2
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-34 150.6 122 59.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 7.4e-34 148.3 162 48.8
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.7e-33 146.0 112 59.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.1e-32 144.4 80 86.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 9.0e-32 141.4 134 52.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.4e-29 134.0 92 67.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.7e-25 119.4 80 72.5
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.7e-20 103.2 126 50.8
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.6e-20 102.8 144 44.4
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.9e-16 88.6 71 64.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.9e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-12 77.8 172 35.5
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.6e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 4.5e-07 59.3 64 54.7


User provided reference genes

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