Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 8.4e-310 1066.2 560 100.0
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 3.1e-296 1021.1 560 95.2
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 4.5e-279 964.1 565 90.1
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 6.3e-273 943.7 564 88.7
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 2.0e-271 938.7 566 88.0
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 7.7e-271 936.8 564 87.8
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 1.7e-270 935.6 562 87.7
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 1.9e-269 932.2 564 87.4
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 4.2e-269 931.0 564 87.4
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 6.1e-268 927.2 567 88.4
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 3.4e-258 894.8 569 84.2
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 4.9e-249 864.4 532 85.7
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 3.4e-226 788.5 583 73.8
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 1.4e-200 703.4 528 68.9
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 7.1e-200 701.0 562 66.2
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 1.6e-199 699.9 543 66.3
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 7.9e-199 697.6 578 64.7
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 7.9e-199 697.6 578 64.7
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.3e-198 696.8 497 71.8
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 3.0e-198 695.7 497 71.6
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 3.9e-198 695.3 497 71.8
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 1.9e-197 693.0 513 69.4
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 2.5e-197 692.6 532 67.7
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 1.3e-196 690.3 534 67.4
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 8.2e-196 687.6 507 69.2
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 1.4e-195 686.8 567 64.2
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 1.8e-195 686.4 545 65.9
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 3.1e-195 685.6 517 69.1
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 3.1e-195 685.6 558 64.7
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 5.3e-195 684.9 505 69.5
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 1.2e-191 673.7 561 62.7
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 3.5e-191 672.2 494 68.6
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 3.5e-191 672.2 555 63.2
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 5.1e-190 668.3 524 66.0
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 1.1e-189 667.2 568 62.9
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.5e-189 666.8 531 64.2
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 1.5e-189 666.8 509 68.0
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 5.7e-189 664.8 536 63.8
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 7.4e-189 664.5 499 67.7
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 2.1e-188 662.9 573 61.6
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 4.8e-188 661.8 556 62.4
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 1.8e-187 659.8 500 67.4
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 1.2e-186 657.1 541 64.7
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 3.4e-186 655.6 513 65.9
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 3.4e-186 655.6 501 66.7
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 7.6e-186 654.4 499 67.3
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 1.0e-185 654.1 498 67.3
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.1e-184 650.6 510 65.7
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 4.2e-184 648.7 573 60.9
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 2.1e-183 646.4 505 66.7
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 4.6e-183 645.2 492 67.3
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 3.0e-182 642.5 514 63.4
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 6.7e-182 641.3 501 64.5
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 4.3e-181 638.6 522 64.6
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 9.7e-181 637.5 518 63.9
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 2.2e-180 636.3 516 64.3
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 4.1e-179 632.1 508 65.6
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 2.9e-177 625.9 526 62.7
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 8.5e-177 624.4 539 61.0
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 4.2e-176 622.1 507 63.7
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 5.5e-176 621.7 434 72.1
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 1.6e-175 620.2 511 62.0
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 1.1e-173 614.0 557 59.2
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 2.8e-172 609.4 495 64.0
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 4.1e-171 605.5 516 61.6
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 4.1e-171 605.5 525 60.2
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 2.0e-170 603.2 479 64.3
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 5.9e-170 601.7 482 63.1
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 1.3e-169 600.5 544 57.9
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 9.4e-168 594.3 511 60.7
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 8.8e-166 587.8 504 59.5
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 7.4e-165 584.7 578 56.6
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 2.9e-161 572.8 496 61.1
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 1.1e-160 570.9 480 61.0
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 1.5e-160 570.5 491 60.9
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 7.2e-160 568.2 566 57.8
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 8.8e-158 561.2 511 58.1
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 1.6e-154 550.4 497 56.5
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.7e-154 549.7 612 51.6
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.0e-153 547.7 472 62.1
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.3e-153 547.4 514 57.0
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 1.6e-151 540.4 489 59.7
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 1.4e-150 537.3 407 66.6
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 4.5e-146 522.3 445 61.8
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 4.2e-144 515.8 565 51.9
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 1.2e-138 497.7 533 53.3
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.3e-136 489.6 508 53.7
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 3.0e-134 483.0 505 50.1
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 2.9e-132 476.5 525 50.1
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 2.3e-129 466.8 557 50.6
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 9.5e-128 461.5 317 75.1
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 2.8e-127 459.9 489 48.1
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 1.8e-126 457.2 317 73.8
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 1.1e-123 448.0 498 48.4
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 3.9e-113 412.9 371 55.5
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 4.3e-112 409.5 231 95.2
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 2.8e-111 406.8 252 84.9
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 3.2e-99 366.7 516 42.2
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 3.0e-65 253.8 556 34.9
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.0e-61 241.1 230 54.3
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.3e-57 227.6 248 50.0
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.8e-52 210.3 199 52.8
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 8.0e-50 202.6 182 52.2
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 5.2e-49 199.9 198 53.5
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 5.7e-48 196.4 142 71.8
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 2.7e-42 177.6 197 48.7
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 1.6e-34 151.8 182 49.5
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 4.0e-33 147.1 204 45.1
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.4e-30 138.7 112 64.3
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 1.2e-21 109.0 70 84.3
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 8.9e-17 92.8 59 81.4
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 3.3e-11 74.3 117 41.9
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 2.1e-10 71.6 117 40.2


User provided reference genes

Program Settings