Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 8.1e-61 236.9 119 100.0
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 2.1e-53 212.2 119 89.1
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 8.7e-47 190.3 122 82.0
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 1.6e-45 186.0 122 80.3
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 4.8e-45 184.5 121 80.2
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 6.2e-45 184.1 120 81.7
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 1.4e-44 183.0 120 78.3
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 9.0e-44 180.3 123 80.5
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 9.0e-44 180.3 123 80.5
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 9.0e-44 180.3 120 76.7
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 3.4e-43 178.3 119 79.0
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 4.9e-42 174.5 121 79.3
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 4.9e-42 174.5 121 79.3
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 1.9e-41 172.6 119 78.2
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 3.2e-41 171.8 119 78.2
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 3.2e-41 171.8 119 78.2
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 3.7e-37 158.3 119 68.9
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 6.5e-34 147.5 121 66.1
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 6.5e-34 147.5 121 66.1
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 1.4e-25 119.8 119 57.1
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 2.0e-11 72.8 122 39.3
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.3e-10 70.1 120 36.7
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 2.9e-10 68.9 123 41.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.0e-10 68.2 121 37.2
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.4e-09 66.6 117 39.3
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.4e-09 66.6 119 40.3
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.2e-09 65.1 119 36.1
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.5e-09 64.7 116 35.3
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 9.4e-09 63.9 121 38.0
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.2e-08 63.5 120 35.8
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.6e-08 63.2 119 38.7
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.6e-08 63.2 121 36.4
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.6e-08 63.2 118 33.9
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.6e-08 63.2 121 36.4
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.7e-08 62.4 124 37.1
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 6.1e-08 61.2 125 33.6
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.4e-07 60.1 124 33.9
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 5.1e-07 58.2 119 37.8
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 5.1e-07 58.2 126 36.5
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 5.1e-07 58.2 117 35.9
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 6.7e-07 57.8 122 35.2
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 6.7e-07 57.8 117 31.6
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.1e-06 57.0 126 32.5
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.1e-06 57.0 123 35.8
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 1.1e-06 57.0 131 32.8
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.5e-06 56.6 119 37.8
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.0e-06 56.2 117 35.0
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 2.6e-06 55.8 129 34.1
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.4e-06 55.1 117 31.6
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 4.4e-06 55.1 117 34.2
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 5.7e-06 54.7 124 31.5
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 9.7e-06 53.9 117 29.1


User provided reference genes

Program Settings