Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 9.6e-107 390.2 200 100.0
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.4e-89 333.2 176 96.6
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.5e-83 313.2 202 82.7
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 5.0e-79 298.1 180 85.6
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.0e-76 288.9 201 79.1
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 4.4e-75 285.0 205 77.1
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 4.8e-74 281.6 180 82.8
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 5.3e-73 278.1 180 81.7
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 7.7e-72 274.2 180 81.1
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 8.2e-66 254.2 180 76.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 7.7e-64 247.7 205 67.8
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.8e-63 245.4 204 69.1
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.6e-56 223.4 134 86.6
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 2.2e-55 219.5 133 85.0
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 3.8e-55 218.8 133 85.7
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.1e-54 217.2 192 64.1
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 9.4e-54 214.2 195 63.1
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.2e-53 213.8 118 89.0
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 2.7e-53 212.6 169 67.5
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.6e-53 212.2 150 74.7
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 3.6e-53 212.2 164 68.9
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 4.7e-53 211.8 180 63.9
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 8.0e-53 211.1 164 68.3
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 8.0e-53 211.1 164 68.3
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 1.4e-52 210.3 142 78.9
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 2.3e-52 209.5 184 63.6
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.0e-52 209.1 193 62.7
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 5.2e-52 208.4 172 66.9
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 5.2e-52 208.4 169 66.9
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.2e-51 207.2 177 66.1
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.2e-51 207.2 139 79.1
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.2e-51 207.2 140 77.9
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 2.0e-51 206.5 114 87.7
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 3.4e-51 205.7 109 92.7
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 5.7e-51 204.9 193 60.6
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 7.5e-51 204.5 134 79.9
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.5e-51 204.5 159 70.4
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 9.8e-51 204.1 182 62.1
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.3e-50 203.8 158 69.6
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.3e-50 203.8 134 79.9
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 1.7e-50 203.4 166 66.3
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 2.2e-50 203.0 150 72.0
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.8e-50 202.6 160 70.6
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.8e-50 202.6 181 65.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.7e-50 202.2 134 79.1
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 3.7e-50 202.2 198 60.1
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 3.7e-50 202.2 123 83.7
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 3.7e-50 202.2 132 77.3
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 4.8e-50 201.8 142 73.2
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.3e-50 201.4 141 73.8
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 6.3e-50 201.4 109 88.1
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 6.3e-50 201.4 123 82.9
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 8.3e-50 201.1 115 87.0
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 8.3e-50 201.1 168 66.7
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-49 200.7 170 65.9
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.4e-49 199.5 116 85.3
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 3.1e-49 199.1 192 60.4
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 3.1e-49 199.1 133 75.9
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 3.1e-49 199.1 115 83.5
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 9.1e-49 197.6 195 59.5
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 9.1e-49 197.6 106 89.6
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.2e-48 197.2 159 68.6
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.6e-48 196.8 141 71.6
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.0e-48 196.4 121 79.3
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.7e-48 196.1 107 88.8
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.0e-47 194.1 112 85.7
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.3e-47 193.7 121 82.6
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 1.3e-47 193.7 139 71.9
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.9e-47 192.6 159 66.7
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 3.8e-47 192.2 130 75.4
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 3.8e-47 192.2 150 68.7
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 5.0e-47 191.8 193 58.0
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 6.5e-47 191.4 124 75.8
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.5e-47 191.4 192 57.8
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 6.5e-47 191.4 153 66.7
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 8.6e-47 191.0 114 81.6
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.1e-46 190.7 129 75.2
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.5e-46 190.3 220 53.2
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.9e-46 189.9 192 57.3
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.9e-46 189.9 192 58.3
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.9e-46 189.9 133 73.7
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 4.2e-46 188.7 122 77.9
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 5.5e-46 188.3 126 74.6
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 7.2e-46 188.0 170 60.6
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 9.5e-46 187.6 192 57.8
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-45 187.2 192 56.8
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.6e-45 186.8 186 57.5
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.1e-45 186.4 142 70.4
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 6.1e-45 184.9 125 75.2
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.0e-44 184.1 142 70.4
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.0e-44 184.1 142 70.4
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.4e-44 183.7 105 83.8
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.8e-44 183.3 181 57.5
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.3e-44 183.0 112 83.0
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 4.0e-44 182.2 142 69.7
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 4.0e-44 182.2 170 58.8
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 4.0e-44 182.2 191 56.0
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 6.8e-44 181.4 112 82.1
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 3.4e-43 179.1 128 73.4
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 4.4e-43 178.7 170 57.6
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 2.2e-42 176.4 109 79.8
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.6e-40 170.2 112 77.7
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.6e-40 170.2 112 77.7
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.9e-38 163.3 163 57.7
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.6e-37 160.2 108 71.3
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 8.0e-37 157.9 165 58.8
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.5e-35 153.7 89 88.8
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 7.5e-35 151.4 112 72.3
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 1.7e-34 150.2 106 74.5
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-32 143.7 143 57.3
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.3e-26 124.0 80 80.0
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 2.4e-25 119.8 119 59.7
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.5e-24 115.9 62 88.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.0e-24 115.2 66 86.4
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.0e-24 115.2 66 86.4
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.0e-23 114.4 122 55.7
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.9e-23 112.5 60 88.3
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 6.6e-23 111.7 60 88.3
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 6.6e-23 111.7 73 78.1
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.2e-21 107.5 157 43.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 4.4e-19 99.0 99 55.6
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.9e-18 96.3 111 51.4
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 4.9e-18 95.5 71 73.2
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.4e-17 94.0 79 60.8
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.0e-15 87.8 98 48.0
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 6.6e-15 85.1 122 41.8
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 9.5e-14 81.3 61 68.9
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 4.7e-13 79.0 60 71.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 4.9e-10 68.9 61 57.4
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.0e-07 61.2 89 41.6
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 3.9e-07 59.3 85 43.5


User provided reference genes

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