Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 1.4e-212 743.4 647 100.0
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 6.1e-203 711.4 647 97.2
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 4.2e-188 662.1 651 94.0
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 1.9e-172 610.1 656 89.6
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 4.4e-169 599.0 656 89.2
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 3.9e-149 532.7 639 87.0
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 2.0e-145 520.4 655 85.3
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 2.6e-145 520.0 654 85.5
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 2.6e-145 520.0 654 85.5
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 4.0e-138 496.1 664 83.9
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 1.1e-132 478.0 663 82.8
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 9.3e-127 458.4 660 81.5
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.5e-124 451.1 661 80.5
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 3.3e-124 449.9 660 80.8
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.8e-123 446.8 655 80.3
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 1.8e-122 444.1 655 80.2
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 6.9e-122 442.2 653 81.2
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 2.5e-103 380.6 654 76.8
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 9.7e-100 368.6 653 76.3
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 4.5e-81 306.6 666 71.0
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 1.3e-64 251.9 672 67.3
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 2.1e-62 244.6 248 62.9
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 4.7e-62 243.4 673 67.2
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 1.8e-61 241.5 660 66.1
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 3.0e-61 240.7 680 65.0
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 4.4e-60 236.9 659 65.9
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.8e-58 231.5 672 65.2
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 2.0e-57 228.0 660 65.0
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 8.6e-56 222.6 659 65.3
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 5.6e-55 219.9 669 64.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 3.6e-54 217.2 660 65.2
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 4.7e-54 216.9 675 64.3
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 6.1e-54 216.5 663 64.4
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.4e-53 215.3 681 63.0
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.9e-53 212.6 682 63.0
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 1.2e-52 212.2 661 64.3
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 2.2e-51 208.0 673 62.9
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.1e-50 205.7 674 62.2
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.1e-50 205.7 677 63.1
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.4e-50 205.3 676 62.7
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.9e-50 204.9 677 63.2
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.6e-49 201.8 303 48.5
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.6e-49 201.8 672 63.8
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 2.0e-49 201.4 302 47.7
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 3.5e-49 200.7 666 63.4
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 4.6e-49 200.3 678 63.1
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 6.0e-49 199.9 674 62.6
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.8e-49 199.5 686 62.4
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 7.8e-49 199.5 668 64.1
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.0e-48 199.1 686 62.4
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.0e-48 199.1 667 63.7
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 3.0e-48 197.6 689 61.8
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 3.0e-48 197.6 663 63.5
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 3.9e-48 197.2 673 64.2
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 6.6e-48 196.4 666 62.8
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 1.9e-47 194.9 303 45.9
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.9e-47 194.9 670 62.5
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 2.5e-47 194.5 690 62.0
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.2e-46 192.2 676 62.6
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.1e-45 189.1 636 64.6
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.4e-45 188.7 674 62.3
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 1.8e-45 188.3 668 63.0
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 6.8e-45 186.4 676 63.3
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.2e-44 185.7 633 64.6
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.6e-44 184.5 689 60.7
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 5.8e-44 183.3 692 60.3
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 7.5e-44 183.0 671 61.7
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 9.8e-44 182.6 674 62.3
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.9e-43 181.0 670 60.9
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 3.7e-43 180.6 674 61.3
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 3.7e-43 180.6 675 62.1
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 4.9e-43 180.3 674 63.2
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.4e-43 179.9 692 59.7
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-42 179.1 694 59.4
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-42 179.1 683 60.8
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.4e-42 178.7 300 45.0
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.4e-42 177.9 296 45.3
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 5.4e-42 176.8 671 61.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 9.2e-42 176.0 286 48.3
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.6e-41 175.3 676 61.2
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 2.1e-41 174.9 672 61.5
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 1.3e-40 172.2 297 45.8
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 3.0e-40 171.0 298 45.0
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 5.1e-40 170.2 684 60.7
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.5e-39 167.9 304 43.4
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 3.3e-39 167.5 676 60.9
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.1e-38 164.9 297 42.1
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.1e-37 162.5 678 60.8
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.1e-37 162.5 264 45.5
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.8e-37 161.8 670 59.3
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 4.0e-37 160.6 660 45.6
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.2e-36 159.1 671 60.8
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.0e-36 158.3 662 61.5
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 4.4e-36 157.1 666 60.4
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.7e-35 155.2 218 52.3
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 1.6e-33 148.7 303 39.9
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 4.6e-33 147.1 297 39.7
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.3e-32 144.8 297 39.7
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.5e-31 142.1 668 60.6
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 2.5e-31 141.4 675 59.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 4.3e-31 140.6 304 39.8
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 7.3e-31 139.8 294 39.5
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 1.2e-30 139.0 295 39.3
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.2e-30 139.0 304 39.1
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 2.1e-30 138.3 670 59.3
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.8e-30 137.9 293 37.5
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.8e-30 137.9 302 38.7
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 1.1e-29 136.0 297 40.7
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 3.1e-29 134.4 296 38.5
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.2e-28 132.5 296 40.5
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-28 132.5 271 42.8
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.0e-28 131.7 303 39.3
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 1.3e-27 129.0 148 57.4
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.8e-27 127.5 258 41.1
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.4e-26 125.6 302 37.4
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.2e-26 124.4 319 37.3
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 9.3e-26 122.9 296 37.8
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.2e-25 122.5 283 37.5
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 1.2e-25 122.5 294 39.5
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.6e-25 122.1 296 37.2
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.1e-25 121.7 288 37.5
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.0e-24 119.4 296 36.5
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.3e-24 119.0 305 37.7
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 1.7e-24 118.6 296 37.8
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 1.5e-23 115.5 674 57.3
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.5e-23 114.8 672 56.7
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 2.5e-23 114.8 307 36.2
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 3.3e-23 114.4 257 38.5
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 9.6e-23 112.8 668 57.2
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.3e-22 112.5 304 39.1
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-22 111.7 650 58.0
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.2e-22 110.2 285 37.2
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.2e-22 110.2 285 37.2
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 6.2e-22 110.2 647 55.6
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.9e-21 106.7 281 35.6
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 9.0e-21 106.3 269 33.5
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 4.4e-20 104.0 217 39.2
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 5.8e-20 103.6 292 36.0
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 5.8e-20 103.6 293 36.5
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 9.9e-20 102.8 263 39.2
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 2.2e-19 101.7 684 56.7
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.9e-19 101.3 261 34.5
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 4.9e-19 100.5 265 37.0
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.9e-19 100.5 249 36.1
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 1.1e-18 99.4 269 37.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.9e-18 98.6 255 37.3
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.9e-18 98.6 249 34.9
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.2e-18 97.4 306 32.7
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.2e-18 97.4 161 42.9
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 5.4e-18 97.1 292 32.2
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 7.1e-18 96.7 179 42.5
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.7e-16 92.0 250 34.0
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 3.0e-16 91.3 300 35.0
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 3.9e-16 90.9 273 33.3
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.5e-15 89.0 268 33.6
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 4.3e-15 87.4 259 34.0
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 4.3e-15 87.4 225 38.2
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 9.6e-15 86.3 284 31.7
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.8e-14 84.7 666 56.0
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 4.8e-14 84.0 287 31.0
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 4.8e-14 84.0 254 34.6
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 6.2e-14 83.6 289 32.5
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.8e-13 82.0 238 33.2
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 2.4e-13 81.6 284 31.3
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 3.1e-13 81.3 304 33.9
AT4G12020 Arabidopsis thaliana HOM05D000005 ORTHO05D012037 9.0e-13 79.7 91 56.0
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.6e-12 78.2 188 35.1
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 3.4e-12 77.8 298 33.9
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.5e-12 77.4 151 38.4
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 5.8e-12 77.0 142 38.7
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 5.8e-12 77.0 254 33.1
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 9.9e-12 76.3 557 47.6
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.3e-11 75.9 142 37.3
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.2e-11 75.1 296 31.4
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 6.4e-11 73.6 263 32.3
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 3.2e-10 71.2 285 30.9
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.2e-10 71.2 136 38.2
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 9.3e-10 69.7 143 40.6
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.6e-09 68.9 259 31.3
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.1e-09 68.6 259 31.7
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 2.3e-08 65.1 280 31.1
Nitab4.5_0001748g0030 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.5e-07 61.6 242 30.2
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.3e-07 61.2 242 32.2
Oeu009280.1 Olea europaea HOM05D003548 ORTHO05D004066 3.3e-07 61.2 271 30.6
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 7.4e-07 60.1 245 29.0
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 4.8e-06 57.4 229 31.4
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 6.2e-06 57.0 302 28.8


User provided reference genes

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