Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.4e-197 693.0 392 100.0
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.6e-182 641.7 393 92.9
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 2.0e-180 636.0 392 91.6
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 2.1e-166 589.3 393 84.0
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.8e-165 586.3 392 86.0
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 7.3e-159 564.3 417 80.6
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.6e-158 562.0 412 79.6
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 6.2e-158 561.2 412 81.3
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 6.2e-158 561.2 416 81.5
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.4e-157 560.1 419 80.4
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 2.3e-157 559.3 395 79.5
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 6.8e-157 557.8 411 80.0
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-156 557.0 419 79.5
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 8.3e-155 550.8 419 78.3
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.2e-153 547.0 419 79.0
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.0e-152 543.9 422 78.9
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.3e-152 543.5 413 79.2
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.6e-150 536.6 413 78.5
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 6.2e-134 481.5 404 70.0
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 5.0e-107 392.1 400 55.2
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 9.3e-106 387.9 397 58.4
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.2e-105 387.5 400 53.8
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.6e-105 387.1 397 58.4
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.1e-105 386.7 391 57.8
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.6e-105 385.6 391 57.8
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.8e-104 383.6 398 55.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.1e-103 380.9 403 53.3
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.7e-103 378.6 392 56.9
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 8.2e-102 374.8 404 56.9
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 5.3e-101 372.1 420 53.6
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.2e-100 370.9 400 52.2
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.5e-100 370.5 400 55.5
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 2.0e-100 370.2 395 54.4
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 4.5e-100 369.0 422 52.8
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.0e-99 367.9 401 52.4
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.3e-99 367.5 402 53.5
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 2.9e-99 366.3 399 52.9
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 3.8e-99 365.9 397 54.2
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.8e-99 365.9 401 52.1
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 6.5e-99 365.2 406 53.2
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.1e-98 364.4 411 51.1
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.1e-98 364.4 411 52.1
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 1.1e-98 364.4 397 53.9
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 3.2e-98 362.8 397 53.9
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 4.2e-98 362.5 402 53.2
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 5.5e-98 362.1 284 76.4
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 9.4e-98 361.3 398 53.8
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.1e-97 360.1 401 52.1
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 2.1e-97 360.1 409 53.1
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 4.6e-97 359.0 401 53.6
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.1e-97 358.6 401 52.6
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 6.1e-97 358.6 393 53.9
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 6.1e-97 358.6 395 52.4
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 7.9e-97 358.2 405 50.1
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.4e-96 357.5 401 52.4
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 6.7e-96 355.1 403 51.1
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.5e-95 354.0 405 51.4
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.0e-95 353.6 399 52.4
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.6e-95 353.2 400 51.5
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.3e-95 352.8 395 56.5
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 5.7e-95 352.1 398 57.3
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 7.4e-95 351.7 405 52.6
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 9.7e-95 351.3 401 53.9
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.7e-95 351.3 405 52.6
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 9.7e-95 351.3 406 50.7
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 3.7e-94 349.4 395 52.2
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.3e-94 348.6 401 52.1
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 6.3e-94 348.6 401 52.1
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 8.2e-94 348.2 402 51.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.1e-93 347.8 408 52.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.8e-93 347.1 401 50.9
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 2.4e-93 346.7 397 51.6
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 2.4e-93 346.7 405 52.8
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 3.1e-93 346.3 403 50.9
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 4.1e-93 345.9 398 51.3
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 6.9e-93 345.1 405 50.1
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 6.9e-93 345.1 397 52.4
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 9.1e-93 344.7 403 50.6
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 9.1e-93 344.7 403 50.6
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 2.0e-92 343.6 410 50.2
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.4e-92 342.8 402 51.7
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 7.7e-92 341.7 411 50.4
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.3e-91 340.9 408 50.7
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.3e-91 340.9 395 51.4
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.2e-91 340.1 440 47.0
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.9e-91 339.7 403 51.1
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 5.0e-91 339.0 411 49.6
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.1e-90 337.8 401 52.4
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.1e-90 337.8 422 49.1
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 3.6e-89 332.8 398 49.0
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.0e-88 331.3 420 50.0
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.8e-88 330.5 402 49.3
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.8e-88 330.5 405 55.6
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 3.9e-88 329.3 405 56.8
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 5.7e-87 325.5 407 53.6
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 9.7e-87 324.7 385 50.6
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 1.3e-86 324.3 432 48.4
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.7e-86 323.9 394 50.5
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.2e-86 323.6 404 48.5
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.8e-86 323.2 396 49.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 5.3e-85 318.9 404 50.0
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 7.0e-85 318.5 387 49.4
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 9.1e-85 318.2 399 50.4
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.5e-82 310.8 381 53.8
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 2.3e-80 303.5 342 50.9
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.2e-80 302.4 426 45.1
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.0e-75 288.1 400 45.8
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.9e-74 283.9 435 40.7
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 6.8e-72 275.4 405 43.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 4.4e-71 272.7 281 54.8
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.2e-70 270.4 404 45.5
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 7.7e-68 261.9 393 43.8
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.1e-58 231.5 187 81.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 2.5e-58 230.3 275 49.1
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.0e-51 206.1 419 36.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 9.5e-50 201.8 381 36.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.3e-46 191.4 488 33.8
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.6e-41 174.5 547 30.9
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 9.9e-39 165.2 294 40.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 6.4e-38 162.5 225 44.0
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 6.4e-38 162.5 225 44.0
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 6.4e-38 162.5 225 44.0
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 7.1e-37 159.1 147 59.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 3.9e-35 153.3 147 55.1
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 8.6e-35 152.1 411 32.6
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.8e-31 139.4 148 56.8
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 6.4e-30 136.0 410 32.9
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.0e-27 128.6 187 43.9
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.6e-25 121.3 308 34.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 7.8e-20 102.4 374 29.9
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 7.8e-20 102.4 374 29.9
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.2e-13 80.5 185 33.0
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.9e-12 75.9 101 44.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-09 68.6 38 78.9
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 1.2e-07 62.0 315 26.3
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.5e-07 61.6 136 34.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 6.4e-06 56.2 94 37.2


User provided reference genes

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