Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 2091.2 1054 100.0
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 2017.7 1054 95.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1933.7 1054 90.6
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1853.6 1054 86.6
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1852.8 1054 86.8
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1839.7 1056 87.0
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1819.3 1055 85.8
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1813.9 1055 85.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1795.4 1055 84.5
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1793.9 1055 84.4
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1686.8 1054 80.9
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1653.3 1059 77.2
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1442.2 1058 66.5
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1437.2 1055 66.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1396.7 1069 66.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1392.1 1045 65.1
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1389.0 1053 65.3
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1387.5 1055 64.9
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1386.7 1066 65.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1372.5 1055 63.1
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1370.5 1054 64.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1369.0 1053 62.7
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1366.3 1054 64.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1365.1 1056 63.9
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1363.2 1054 64.5
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1363.2 1014 65.2
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1362.8 1041 64.3
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1359.0 1055 62.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1358.2 1049 62.8
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1357.4 1056 62.8
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1356.3 1051 62.0
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1353.2 1061 64.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1350.5 1055 62.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1349.7 1053 64.2
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1348.6 1051 62.4
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1343.2 1053 62.7
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1342.8 1046 63.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1342.0 1050 62.6
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1054 62.6
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1050 62.5
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1334.3 1046 62.0
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1332.4 1082 62.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1330.1 1043 63.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1328.9 1052 61.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1322.4 1056 62.0
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1318.1 1068 60.9
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1049 61.1
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1315.8 1053 61.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1296.6 1047 62.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1291.9 1057 60.5
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1286.9 1052 60.6
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1286.2 1058 59.8
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1282.7 1057 59.8
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1282.3 1068 61.1
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1280.0 1082 60.4
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1278.1 1046 59.9
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1275.8 1059 59.7
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1059 59.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1272.7 1170 56.0
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1264.2 1007 61.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1257.7 1067 58.9
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 944 70.8
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1249.2 1053 59.0
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1245.3 1047 59.7
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1241.5 1088 57.4
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1239.9 1110 56.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1228.4 1047 58.2
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1226.8 1079 57.4
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1224.9 1080 57.7
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1222.6 1055 57.1
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1215.7 1103 57.3
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1215.3 1057 57.8
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1214.9 1061 58.5
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1207.2 1054 56.2
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1198.7 1057 57.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1197.2 1057 56.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1185.2 1050 56.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1176.0 1132 53.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1016 57.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1169.1 1049 56.1
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1166.0 1049 55.9
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1047 57.0
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1139.4 1046 54.2
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1126.7 854 64.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1125.2 1052 54.7
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1117.8 1060 54.8
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1114.0 1178 51.7
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1112.4 1027 53.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1104.4 1052 54.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1078.5 1016 53.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.4e-311 1072.8 1136 50.7
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.0e-300 1036.9 865 57.9
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 3.9e-284 981.9 1055 50.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.5e-280 969.9 1019 49.4
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 5.7e-275 951.4 731 68.9
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.0e-255 887.5 677 63.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.9e-254 883.2 879 53.1
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 2.8e-253 879.4 513 86.0
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.6e-237 827.0 1066 43.7
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.6e-235 819.7 1054 41.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.8e-228 795.0 512 78.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.0e-215 753.1 734 52.7
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.2e-209 733.0 706 52.7
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.1e-200 703.7 725 49.9
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 5.1e-191 672.5 836 42.7
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.0e-186 658.3 509 63.7
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.9e-186 656.0 820 44.4
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.9e-185 654.1 668 50.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.0e-183 646.7 565 58.1
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.8e-173 613.6 994 36.0
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.5e-170 602.1 594 52.9
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 5.5e-169 599.4 1052 37.5
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.1e-168 597.4 861 37.5
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.6e-163 580.5 350 80.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 4.7e-160 569.7 488 59.0
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.5e-146 522.7 438 60.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.8e-138 496.9 378 63.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.3e-125 455.3 449 50.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.8e-119 434.9 855 33.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.0e-118 431.4 342 59.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-104 384.0 391 56.5
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.9e-101 374.4 1126 28.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 9.2e-100 369.4 357 54.1
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 6.6e-90 336.7 270 69.6
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 7.1e-84 316.6 307 56.7
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.9e-68 265.4 960 27.6
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-68 264.2 213 70.0
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.2e-68 264.2 261 52.5
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 9.7e-65 253.1 248 52.4
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.5e-62 244.2 177 67.2
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 1.7e-61 242.3 220 53.6
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.9e-60 238.8 289 45.3
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 7.9e-59 233.4 333 43.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.7e-58 230.3 1117 24.2
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.8e-56 224.2 241 49.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 4.8e-56 224.2 166 63.3
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.2e-52 211.5 206 48.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 2.7e-51 208.4 243 47.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.3e-49 201.4 126 77.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.1e-47 194.5 113 85.8
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.0e-37 163.3 192 44.3
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 6.1e-27 127.5 87 70.1
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 7.5e-25 120.6 163 44.2
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 7.5e-25 120.6 154 44.8
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 9.8e-25 120.2 164 39.6
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.2e-20 104.8 102 53.9
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 4.2e-20 104.8 71 63.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 4.7e-19 101.3 109 45.9
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 8.9e-18 97.1 70 64.3
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 3.7e-16 91.7 87 63.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 6.3e-16 90.9 105 52.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.0e-14 85.9 107 48.6
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.7e-14 85.5 70 58.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 5.9e-14 84.3 124 38.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.0e-10 73.6 85 38.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 2.9e-08 65.5 56 55.4


User provided reference genes

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