Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63670 Arabidopsis thaliana HOM05D008820 ORTHO05D011139 0.0e+00 1342.4 690 100.0
AL2G11560 Arabidopsis lyrata HOM05D008820 ORTHO05D011139 0.0e+00 1255.7 692 93.5
Carub.0002s0118 Capsella rubella HOM05D008820 ORTHO05D011139 0.0e+00 1149.4 693 85.6
Thhalv10023318m.g Eutrema salsugineum HOM05D008820 ORTHO05D011139 0.0e+00 1103.6 687 84.3
Sp2g00990 Schrenkiella parvula HOM05D008820 ORTHO05D011139 3.3e-308 1061.2 695 82.4
CARHR047670 Cardamine hirsuta HOM05D008820 ORTHO05D011139 6.5e-304 1047.0 699 80.3
BraA09t37032Z Brassica rapa HOM05D008820 ORTHO05D011139 2.1e-286 988.8 683 77.7
A09p13800 Brassica napus HOM05D008820 ORTHO05D011139 1.4e-282 976.1 682 77.1
BolC9t54559H Brassica oleracea HOM05D008820 ORTHO05D011139 5.6e-263 911.0 682 73.6
BcaC04g22692 Brassica carinata HOM05D008820 ORTHO05D011139 1.2e-262 909.8 682 73.8
C09p16490 Brassica napus HOM05D008820 ORTHO05D011139 1.2e-262 909.8 682 73.8
BcaB07g31557 Brassica carinata HOM05D008820 ORTHO05D011139 1.6e-257 892.9 681 73.4
Aa31LG2G880 Aethionema arabicum HOM05D008820 ORTHO05D011139 5.6e-231 804.7 712 65.4
C09p18650 Brassica napus HOM05D008820 ORTHO05D011139 8.1e-230 800.8 687 67.7
BolC9t54760H Brassica oleracea HOM05D008820 ORTHO05D011139 2.0e-228 796.2 687 67.8
A09p15380 Brassica napus HOM05D008820 ORTHO05D011139 9.3e-226 787.3 686 66.6
BraA09t37180Z Brassica rapa HOM05D008820 ORTHO05D011139 1.3e-224 783.5 686 66.3
BcaNung06083 Brassica carinata HOM05D008820 ORTHO05D011139 4.6e-217 758.4 687 65.4
THA.LOC104817974 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 9.8e-159 564.7 784 48.1
THA.LOC104823587 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 4.9e-150 535.8 743 48.9
C07p02790 Brassica napus HOM05D008820 ORTHO05D011139 8.3e-57 226.1 210 63.3
C01p12760 Brassica napus HOM05D008820 ORTHO05D011139 3.5e-47 194.1 142 69.7
BolC3t20944H Brassica oleracea HOM05D008820 ORTHO05D011139 3.5e-47 194.1 142 69.7
BolC3t16052H Brassica oleracea HOM05D008820 ORTHO05D011139 1.1e-45 189.1 142 68.3
C02p20010 Brassica napus HOM05D008820 ORTHO05D011139 2.5e-45 188.0 147 66.0
COL.COLO4_34473 Corchorus olitorius HOM05D002082 ORTHO05D002130 4.9e-41 173.7 836 27.3
BcaB05g22617 Brassica carinata HOM05D008820 ORTHO05D011139 4.6e-39 167.2 154 61.7
Cpa.g.sc74.55 Carica papaya HOM05D002082 ORTHO05D002130 1.5e-37 162.2 936 24.0
A07p03780 Brassica napus HOM05D008820 ORTHO05D011139 4.4e-34 150.6 141 61.7
BraA07t28170Z Brassica rapa HOM05D008820 ORTHO05D011139 4.4e-34 150.6 141 61.7
BraA07t28172Z Brassica rapa HOM05D008820 ORTHO05D011139 4.4e-34 150.6 141 61.7
Thecc.03G279700 Theobroma cacao HOM05D002082 ORTHO05D002130 1.7e-33 148.7 940 24.8
BraA07t28167Z Brassica rapa HOM05D008820 ORTHO05D011139 4.9e-33 147.1 143 60.1
Atru.chr9.2180 Acer truncatum HOM05D002082 ORTHO05D002130 1.4e-32 145.6 899 24.7
Gohir.A08G183050 Gossypium hirsutum HOM05D002082 ORTHO05D011139 8.6e-30 136.3 696 24.7
Gorai.004G212500 Gossypium raimondii HOM05D002082 ORTHO05D011139 5.6e-29 133.7 696 24.9
Gohir.D08G201600 Gossypium hirsutum HOM05D002082 ORTHO05D011139 2.3e-27 128.3 696 24.6
FAN13G1469 Fragaria x ananassa HOM05D002082 ORTHO05D002130 5.8e-26 123.6 873 24.6
FAN08G0625 Fragaria x ananassa HOM05D002082 ORTHO05D002130 7.6e-26 123.2 862 25.3
FvH4_5g02600 Fragaria vesca HOM05D002082 ORTHO05D002130 1.4e-24 119.0 860 24.7
FAN04G2070 Fragaria x ananassa HOM05D002082 ORTHO05D002130 4.1e-24 117.5 858 24.7
RcHm_v2.0_Chr7g0197501 Rosa chinensis HOM05D002082 ORTHO05D002130 4.1e-24 117.5 888 24.1
FAN18G2062 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.6e-23 115.5 870 24.4
Gohir.D12G230900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.5e-23 114.4 920 22.9
Gorai.008G247100 Gossypium raimondii HOM05D002082 ORTHO05D002130 2.3e-22 111.7 921 22.8
MD14G1105800 Malus domestica HOM05D002082 ORTHO05D002130 2.8e-20 104.8 926 22.9
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 3.6e-20 104.4 880 23.2
Manes.01G059400 Manihot esculenta HOM05D002082 ORTHO05D002130 3.6e-20 104.4 854 22.6
QL12p032830 Quercus lobata HOM05D002082 ORTHO05D002130 3.6e-20 104.4 932 24.2
Duzib205G1702 Durio zibethinus HOM05D002082 ORTHO05D002130 1.8e-19 102.1 967 22.6
Duzib068G0569 Durio zibethinus HOM05D002082 ORTHO05D002130 2.4e-19 101.7 972 22.4
Duzib084G0248 Durio zibethinus HOM05D002082 ORTHO05D002130 4.0e-19 100.9 301 29.9
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 3.4e-18 97.8 250 33.2
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 7.6e-18 96.7 251 32.3
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 1.3e-17 95.9 290 31.0
Potri.001G103400 Populus trichocarpa HOM05D002082 ORTHO05D002130 2.9e-17 94.7 884 22.6
Gohir.A12G229800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.8e-17 94.4 245 29.4
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-16 92.8 250 32.0
Actinidia33420 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-16 92.8 251 32.3
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.4e-16 92.4 252 30.2
BolC1t01424H Brassica oleracea HOM05D008820 ORTHO05D011139 1.4e-16 92.4 118 49.2
Lj7A512T28 Lonicera japonica HOM05D002082 ORTHO05D002130 1.4e-16 92.4 825 23.9
MD06G1085000 Malus domestica HOM05D002082 ORTHO05D002130 4.2e-16 90.9 240 31.7
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.0e-14 86.3 228 31.6
AUR62022567 Chenopodium quinoa HOM05D002082 ORTHO05D002130 5.1e-14 84.0 329 29.5
GSVIVG01026934001 Vitis vinifera HOM05D002082 ORTHO05D002130 1.1e-13 82.8 277 31.8
BolC1t01253H Brassica oleracea HOM05D008820 ORTHO05D011139 4.3e-13 80.9 138 47.1
Lj9A583T65 Lonicera japonica HOM05D002082 ORTHO05D002130 7.3e-13 80.1 853 23.1
DCAR_006930 Daucus carota HOM05D002082 ORTHO05D002130 2.8e-12 78.2 223 27.8
Dinv37634 Davidia involucrata HOM05D002082 ORTHO05D002130 4.8e-12 77.4 273 26.0
Potri.014G084600 Populus trichocarpa HOM05D002082 ORTHO05D002130 8.1e-12 76.6 263 27.8
Prupe.5G101000 Prunus persica HOM05D002082 ORTHO05D002130 1.8e-11 75.5 268 30.6
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 1.8e-11 75.5 236 27.5
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 2.4e-11 75.1 289 24.9
AUR62004359 Chenopodium quinoa HOM05D002082 ORTHO05D002130 2.4e-11 75.1 329 28.0
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 2.4e-11 75.1 876 22.3
Eucgr.E00627 Eucalyptus grandis HOM05D002082 ORTHO05D002130 4.0e-11 74.3 155 29.0
Eucgr.E00135 Eucalyptus grandis HOM05D002082 ORTHO05D002130 5.3e-11 73.9 215 31.6
Migut.A00735 Erythranthe guttata HOM05D002082 ORTHO05D002130 6.9e-11 73.6 245 26.9
MSTRG.17269 Avicennia marina HOM05D002082 ORTHO05D002130 9.0e-11 73.2 252 27.0
MELO3C005681.2 Cucumis melo HOM05D002082 ORTHO05D002130 9.0e-11 73.2 154 29.2
HanXRQChr16g0522751 Helianthus annuus HOM05D002082 ORTHO05D002130 9.0e-11 73.2 214 30.8
Potri.002G160000 Populus trichocarpa HOM05D002082 ORTHO05D002130 9.0e-11 73.2 240 27.1
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 9.0e-11 73.2 251 27.5
CsaV3_5G002760 Cucumis sativus L. HOM05D002082 ORTHO05D002130 1.2e-10 72.8 154 29.2
Gorai.005G030500 Gossypium raimondii HOM05D002082 ORTHO05D002130 1.2e-10 72.8 248 29.8
DCAR_004631 Daucus carota HOM05D002082 ORTHO05D002130 1.5e-10 72.4 524 22.1
Manes.05G034100 Manihot esculenta HOM05D002082 ORTHO05D002130 1.5e-10 72.4 249 28.5
Cfa012223 Carpinus fangiana HOM05D002082 ORTHO05D002130 3.4e-10 71.2 162 30.2
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 3.4e-10 71.2 282 28.0
PGR042G2129 Punica granatum HOM05D002082 ORTHO05D002130 3.4e-10 71.2 751 23.3
Gohir.D02G024600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 4.5e-10 70.9 248 29.4
Sabra01G0078100 Salix brachista HOM05D002082 ORTHO05D002130 4.5e-10 70.9 237 30.0
QL08p048793 Quercus lobata HOM05D002082 ORTHO05D002130 5.8e-10 70.5 285 25.6
SGA_v2.0_scaffold173G39174 Striga asiatica HOM05D002082 ORTHO05D002130 5.8e-10 70.5 220 28.6
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 5.8e-10 70.5 823 21.4
Manes.01G256600 Manihot esculenta HOM05D002082 ORTHO05D002130 9.9e-10 69.7 217 28.6
SGA_v2.0_scaffold479G52240 Striga asiatica HOM05D002082 ORTHO05D002130 9.9e-10 69.7 234 28.2
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 1.3e-09 69.3 251 27.9
Duzib268G0073 Durio zibethinus HOM05D002082 ORTHO05D002130 1.3e-09 69.3 267 27.7
ECA234G4153 Erigeron canadensis HOM05D002082 ORTHO05D002130 1.3e-09 69.3 214 30.4
Manes.02G019700 Manihot esculenta HOM05D002082 ORTHO05D002130 1.3e-09 69.3 270 27.0
Gohir.A02G020600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.7e-09 68.9 247 28.7
PGR031G0369 Punica granatum HOM05D002082 ORTHO05D002130 1.7e-09 68.9 885 21.1
BraA06t24331Z Brassica rapa HOM05D008820 ORTHO05D011139 2.2e-09 68.6 41 75.6
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 2.2e-09 68.6 252 29.8
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 2.2e-09 68.6 263 29.3
Oeu009151.1 Olea europaea HOM05D002082 ORTHO05D002130 2.9e-09 68.2 246 28.0
Haze_08787 Corylus avellana HOM05D002082 ORTHO05D002130 8.4e-09 66.6 148 30.4
FvH4_7g14290 Fragaria vesca HOM05D002082 ORTHO05D002130 8.4e-09 66.6 246 29.3
CANSAT56G4299 Cannabis sativa HOM05D002082 ORTHO05D002130 1.1e-08 66.2 311 31.5
Sed0022826 Sechium edule HOM05D002082 ORTHO05D002130 1.4e-08 65.9 156 30.8
Actinidia33419 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.9e-08 65.5 306 26.8
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 1.9e-08 65.5 228 26.8
CANSAT21G1957 Cannabis sativa HOM05D002082 ORTHO05D002130 3.2e-08 64.7 311 31.5
FAN06G4139 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.2e-08 64.7 246 28.9
FAN10G2557 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.2e-08 64.7 245 27.3
FAN10G2676 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.2e-08 64.7 245 27.3
FAN06G2330 Fragaria x ananassa HOM05D002082 ORTHO05D002130 4.2e-08 64.3 246 28.9
Lsat_1_v5_gn_4_36100 Lactuca sativa HOM05D002082 ORTHO05D002130 4.2e-08 64.3 216 29.2
Manes.06G173066 Manihot esculenta HOM05D002082 ORTHO05D002130 5.4e-08 63.9 246 27.6
Oeu053748.1 Olea europaea HOM05D002082 ORTHO05D002130 5.4e-08 63.9 247 28.7
FAN03G3385 Fragaria x ananassa HOM05D002082 ORTHO05D002130 7.1e-08 63.5 245 27.3
Manes.05G044766 Manihot esculenta HOM05D002082 ORTHO05D002130 7.1e-08 63.5 263 25.5
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 7.1e-08 63.5 378 24.3
Ciclev10018878m.g Citrus clementina HOM05D002082 ORTHO05D002130 2.7e-07 61.6 726 20.8
DCAR_000349 Daucus carota HOM05D002082 ORTHO05D045079 2.7e-07 61.6 448 24.1
DCAR_008398 Daucus carota HOM05D002082 ORTHO05D045079 2.7e-07 61.6 448 24.1
Nitab4.5_0000678g0100 Nicotiana tabacum HOM05D002082 ORTHO05D002130 3.5e-07 61.2 226 25.2
MD07G1136900 Malus domestica HOM05D002082 ORTHO05D002130 4.6e-07 60.8 260 25.8
Haze_15507 Corylus avellana HOM05D002082 ORTHO05D002130 6.0e-07 60.5 307 25.1
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 7.9e-07 60.1 281 24.6
Gohir.A03G095500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 7.9e-07 60.1 216 28.2
Gohir.D02G113800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 7.9e-07 60.1 216 28.2
Medtr7g077740 Medicago truncatula HOM05D002082 ORTHO05D002130 7.9e-07 60.1 272 25.0
Medtr8g098335 Medicago truncatula HOM05D002082 ORTHO05D002130 7.9e-07 60.1 558 22.0
FAN01G1477 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.0e-06 59.7 245 26.5
Glyma.07G070500 Glycine max HOM05D002082 ORTHO05D002130 1.0e-06 59.7 271 26.9
Gohir.A05G029601 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.0e-06 59.7 118 30.5
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 1.0e-06 59.7 316 26.6
Glyma.03G009000 Glycine max HOM05D002082 ORTHO05D002130 1.3e-06 59.3 271 26.2
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 1.8e-06 58.9 239 28.0
Oeu052948.3 Olea europaea HOM05D002082 ORTHO05D002130 1.8e-06 58.9 360 24.4
Eucgr.D02291 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.3e-06 58.5 262 24.8
vmacro13276 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 2.3e-06 58.5 222 27.9
EL10Ac1g00415 Beta vulgaris HOM05D002082 ORTHO05D002130 3.0e-06 58.2 269 24.2
C03p60290 Brassica napus HOM05D008820 ORTHO05D021986 3.0e-06 58.2 36 75.0
BolC3t18291H Brassica oleracea HOM05D008820 ORTHO05D021986 3.0e-06 58.2 36 75.0
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 3.0e-06 58.2 239 29.3
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.1e-06 57.4 709 21.4
CARHR141180 Cardamine hirsuta HOM05D002082 ORTHO05D002130 5.1e-06 57.4 469 24.1
CiPaw.11G134400 Carya illinoinensis HOM05D002082 ORTHO05D002130 5.1e-06 57.4 640 23.0
Phvul.008G062300 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 5.1e-06 57.4 341 24.3
BcaC01g06880 Brassica carinata HOM05D002082 ORTHO05D002130 6.7e-06 57.0 603 22.6
CARHR248540 Cardamine hirsuta HOM05D002082 ORTHO05D002130 6.7e-06 57.0 240 25.8


User provided reference genes

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