Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 4.9e-82 307.8 155 100.0
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.4e-81 306.2 155 99.4
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.2e-73 278.5 156 89.7
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.5e-70 269.6 164 86.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.9e-66 254.6 156 82.7
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.7e-64 248.8 156 81.4
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-63 246.5 157 80.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 5.1e-63 244.6 163 80.4
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.5e-62 242.3 159 78.6
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 2.1e-61 239.2 159 78.0
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.6e-61 238.4 159 77.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.6e-61 238.4 159 77.4
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.3e-60 235.7 159 77.4
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-58 228.8 156 77.6
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-58 228.8 156 77.6
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-58 228.8 156 77.6
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-57 226.5 149 77.9
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 4.1e-57 224.9 147 77.6
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 5.4e-57 224.6 149 77.2
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 3.0e-55 218.8 156 75.0
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 8.6e-55 217.2 147 75.5
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 8.6e-55 217.2 147 75.5
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.6e-55 217.2 146 78.1
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-54 216.9 147 74.8
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 3.3e-54 215.3 147 74.8
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.2e-50 202.6 151 74.8
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.0e-44 181.8 157 65.6
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.0e-44 181.8 157 65.6
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.7e-39 166.4 156 62.2
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.2e-24 117.1 158 47.5
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 4.6e-24 115.2 160 47.5
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.8e-23 113.2 139 50.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.7e-23 111.3 137 46.0
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 6.7e-23 111.3 144 43.1
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 8.7e-23 110.9 139 46.8
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.5e-22 110.2 139 46.8
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 9.6e-22 107.5 144 47.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.1e-21 106.3 128 46.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.1e-21 106.3 164 40.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 2.8e-21 105.9 129 48.1
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 3.7e-21 105.5 162 40.1
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.8e-21 105.1 121 47.9
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 6.2e-21 104.8 138 46.4
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.1e-20 104.0 148 43.2
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.4e-20 103.6 150 42.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.8e-20 103.2 153 41.2
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.4e-20 102.8 113 48.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.4e-20 102.8 119 47.1
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 5.3e-20 101.7 120 49.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 5.3e-20 101.7 120 49.2
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 5.3e-20 101.7 115 48.7
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 9.0e-20 100.9 153 41.2
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.0e-20 100.9 153 41.2
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.0e-20 100.9 153 41.2
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.0e-20 100.9 156 41.7
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 9.0e-20 100.9 113 47.8
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.2e-19 100.5 148 41.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.2e-19 100.5 150 41.3
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 1.5e-19 100.1 118 46.6
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.0e-19 99.8 148 37.8
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.6e-19 99.4 152 42.8
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 2.6e-19 99.4 135 42.2
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.4e-19 99.0 139 41.0
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.5e-19 98.6 110 47.3
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 4.5e-19 98.6 146 43.8
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 4.5e-19 98.6 125 44.8
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 5.8e-19 98.2 140 44.3
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 5.8e-19 98.2 121 44.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 7.6e-19 97.8 154 40.3
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 7.6e-19 97.8 137 44.5
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 7.6e-19 97.8 139 43.9
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 7.6e-19 97.8 153 40.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.0e-18 97.4 163 39.9
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.0e-18 97.4 101 51.5
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.0e-18 97.4 130 46.2
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.0e-18 97.4 140 43.6
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.3e-18 97.1 142 42.3
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.7e-18 96.7 158 42.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.7e-18 96.7 143 43.4
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.7e-18 96.7 139 43.9
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.7e-18 96.7 161 41.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.2e-18 96.3 144 43.8
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.2e-18 96.3 154 40.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.9e-18 95.9 144 43.8
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.9e-18 95.9 153 40.5
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 3.8e-18 95.5 143 41.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.8e-18 95.5 141 41.1
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 3.8e-18 95.5 125 44.8
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 6.5e-18 94.7 137 43.8
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 6.5e-18 94.7 159 39.0
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.5e-18 94.7 124 41.9
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.5e-18 94.7 134 43.3
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 8.4e-18 94.4 126 43.7
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.4e-17 93.6 144 42.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.4e-17 93.6 120 42.5
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.9e-17 93.2 155 41.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.5e-17 92.8 153 38.6
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.2e-17 92.4 152 38.2
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 4.2e-17 92.0 113 41.6
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 9.3e-17 90.9 144 37.5
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.2e-16 90.5 145 40.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.6e-16 90.1 114 44.7
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.7e-16 89.4 113 43.4
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 2.7e-16 89.4 156 35.3
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.5e-16 89.0 120 40.0
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.5e-16 89.0 127 39.4
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.0e-15 87.4 114 43.9
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.0e-15 87.4 161 37.9
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.3e-15 87.0 164 34.8
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.3e-15 87.0 157 36.3
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.8e-15 86.7 78 57.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 3.0e-15 85.9 145 37.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.0e-15 85.9 158 38.0
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.9e-15 85.5 160 36.2
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.1e-15 85.1 161 37.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 6.7e-15 84.7 143 38.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.7e-15 84.7 123 43.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 8.7e-15 84.3 123 43.1
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 8.7e-15 84.3 129 38.0
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.1e-14 84.0 141 41.1
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.1e-14 84.0 127 39.4
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.5e-14 83.6 116 44.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.2e-13 79.7 125 36.8
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.2e-13 79.7 129 37.2
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 3.7e-13 79.0 114 42.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 6.3e-13 78.2 111 40.5
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.1e-12 75.9 141 36.2
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.5e-11 73.6 163 30.1
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.7e-10 70.1 91 45.1
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 2.9e-10 69.3 108 36.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 3.8e-10 68.9 111 37.8
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.9e-09 66.6 107 37.4
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 7.2e-09 64.7 67 50.7
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.2e-09 64.7 56 57.1
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.6e-08 63.5 144 33.3
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.4e-07 60.5 124 34.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.4e-07 60.5 160 31.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-06 57.4 92 31.5
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 2.0e-06 56.6 81 37.0
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 2.0e-06 56.6 121 31.4
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 3.3e-06 55.8 81 37.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.3e-06 55.8 119 28.6
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 3.3e-06 55.8 109 33.9
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.3e-06 55.5 103 35.9
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.3e-06 55.5 123 36.6
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 5.7e-06 55.1 122 30.3
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 9.7e-06 54.3 65 46.2
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 9.7e-06 54.3 152 28.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 9.7e-06 54.3 141 28.4


User provided reference genes

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