Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63295 Arabidopsis thaliana HOM05D013233 ORTHO05D014394 2.7e-53 212.2 152 100.0
Carub.0002s0153 Capsella rubella HOM05D013233 ORTHO05D014394 2.6e-43 179.1 150 88.0
CARHR048120 Cardamine hirsuta HOM05D001293 ORTHO05D014394 1.1e-41 173.7 150 69.3
A09p13570 Brassica napus HOM05D013233 ORTHO05D014394 1.5e-35 153.3 150 68.7
BraA09t37008Z Brassica rapa HOM05D013233 ORTHO05D014394 1.5e-35 153.3 150 68.7
BcaC06g31943 Brassica carinata HOM05D013233 ORTHO05D014394 9.7e-35 150.6 151 55.0
BolC9t54524H Brassica oleracea HOM05D013233 ORTHO05D014394 1.1e-33 147.1 151 65.6
Thhalv10023740m.g Eutrema salsugineum HOM05D001293 ORTHO05D014394 1.4e-33 146.7 151 55.0
BcaC04g22706 Brassica carinata HOM05D013233 ORTHO05D014394 4.1e-33 145.2 151 64.9
AL2G11860 Arabidopsis lyrata HOM05D013233 ORTHO05D014394 2.7e-29 132.5 150 78.0
Sp2g01230 Schrenkiella parvula HOM05D013233 ORTHO05D014394 1.3e-26 123.6 104 72.1
BraA09t37009Z Brassica rapa HOM05D013233 ORTHO05D014394 6.3e-18 94.7 100 55.0
Gohir.A12G226800 Gossypium hirsutum HOM05D001293 ORTHO05D001143 4.1e-09 65.5 100 39.0
Gohir.D12G229200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 1.6e-08 63.5 100 38.0
Gorai.008G245400 Gossypium raimondii HOM05D001293 ORTHO05D001143 1.6e-08 63.5 100 38.0
Ciclev10023664m.g Citrus clementina HOM05D001293 ORTHO05D001143 2.0e-08 63.2 74 59.5
Aa31LG10G15340 Aethionema arabicum HOM05D001293 ORTHO05D001143 4.6e-08 62.0 99 49.5
CANSAT21G1207 Cannabis sativa HOM05D001293 ORTHO05D001143 7.8e-08 61.2 96 50.0
Eucgr.E00569 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.0e-07 60.8 74 44.6
Thecc.03G176100 Theobroma cacao HOM05D001293 ORTHO05D001143 1.3e-07 60.5 94 48.9
Nitab4.5_0008905g0020 Nicotiana tabacum HOM05D001293 ORTHO05D001143 1.7e-07 60.1 79 54.4
AL2G11940 Arabidopsis lyrata HOM05D013233 ORTHO05D014394 3.0e-07 59.3 33 87.9
MSTRG.13834 Avicennia marina HOM05D001293 ORTHO05D001143 3.0e-07 59.3 105 39.0
Actinidia27392 Actinidia chinensis HOM05D001293 ORTHO05D001143 5.0e-07 58.5 96 51.0
BcaC02g07061 Brassica carinata HOM05D001293 ORTHO05D001143 5.0e-07 58.5 102 45.1
CiPaw.11G138200 Carya illinoinensis HOM05D001293 ORTHO05D001143 5.0e-07 58.5 79 41.8
COL.COLO4_14305 Corchorus olitorius HOM05D001293 ORTHO05D001143 5.0e-07 58.5 94 47.9
Cfa008315 Carpinus fangiana HOM05D001293 ORTHO05D001143 6.6e-07 58.2 72 41.7
PGSC0003DMG400003063 Solanum tuberosum HOM05D001293 ORTHO05D001143 6.6e-07 58.2 74 55.4
TPR.G6636 Trifolium pratense HOM05D001293 ORTHO05D001143 6.6e-07 58.2 74 52.7
VMungo0720G0217 Vigna mungo HOM05D001293 ORTHO05D001143 6.6e-07 58.2 94 48.9
EL10Ac5g12774 Beta vulgaris HOM05D001293 ORTHO05D001143 8.6e-07 57.8 71 42.3
Duzib068G0884 Durio zibethinus HOM05D001293 ORTHO05D001143 8.6e-07 57.8 85 50.6
Glyma.01G218000 Glycine max HOM05D001293 ORTHO05D001143 8.6e-07 57.8 72 58.3
Glyma.11G025200 Glycine max HOM05D001293 ORTHO05D001143 8.6e-07 57.8 88 43.2
Psat2g182000 Pisum sativum HOM05D001293 ORTHO05D001143 8.6e-07 57.8 81 55.6
Hma1.2p1_1943F.1_g308490 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 1.1e-06 57.4 78 41.0
Prupe.5G096200 Prunus persica HOM05D001293 ORTHO05D001143 1.1e-06 57.4 72 59.7
THA.LOC104818080 Tarenaya hassleriana HOM05D013233 ORTHO05D014394 1.1e-06 57.4 59 54.2
ATR0680G228 Amborella trichopoda HOM05D001293 ORTHO05D001143 1.5e-06 57.0 85 50.6
COL.COLO4_34428 Corchorus olitorius HOM05D001293 ORTHO05D001143 1.5e-06 57.0 90 37.8
Duzib084G1237 Durio zibethinus HOM05D001293 ORTHO05D001143 1.5e-06 57.0 97 49.5
Eucgr.A02795 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.5e-06 57.0 79 39.2
MBI17_g42122_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 1.5e-06 57.0 72 52.8
QL08p049449 Quercus lobata HOM05D001293 ORTHO05D001143 1.9e-06 56.6 72 55.6
Cfa012145 Carpinus fangiana HOM05D001293 ORTHO05D001143 2.5e-06 56.2 74 48.6
Haze_08887 Corylus avellana HOM05D001293 ORTHO05D001143 2.5e-06 56.2 81 37.0
Haze_08890 Corylus avellana HOM05D001293 ORTHO05D001143 2.5e-06 56.2 81 37.0
MD07G1268200 Malus domestica HOM05D001293 ORTHO05D001143 2.5e-06 56.2 89 46.1
BolC4t28685H Brassica oleracea HOM05D001293 ORTHO05D001143 3.3e-06 55.8 96 46.9
AUR62010609 Chenopodium quinoa HOM05D001293 ORTHO05D001143 3.3e-06 55.8 80 50.0
Glyma.10G236300 Glycine max HOM05D001293 ORTHO05D001143 3.3e-06 55.8 94 47.9
Os04g0533300 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 3.3e-06 55.8 79 51.9
Phvul.007G069500 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 3.3e-06 55.8 94 47.9
Potri.012G140800 Populus trichocarpa HOM05D001293 ORTHO05D001143 3.3e-06 55.8 94 50.0
PGR042G2116 Punica granatum HOM05D001293 ORTHO05D001143 3.3e-06 55.8 98 46.9
Ca_23655_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 4.3e-06 55.5 72 59.7
Migut.F00343 Erythranthe guttata HOM05D001293 ORTHO05D001143 4.3e-06 55.5 94 45.7
Lsat_1_v5_gn_2_131941 Lactuca sativa HOM05D001293 ORTHO05D001143 4.3e-06 55.5 110 42.7
Lj8A25T66 Lonicera japonica HOM05D001293 ORTHO05D001143 4.3e-06 55.5 94 34.0
Potri.014G081300 Populus trichocarpa HOM05D001293 ORTHO05D001143 4.3e-06 55.5 72 56.9
Sp4g27890 Schrenkiella parvula HOM05D001293 ORTHO05D001143 4.3e-06 55.5 146 36.3
Ca_07895_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 5.6e-06 55.1 72 56.9
Ca_10773_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 5.6e-06 55.1 72 55.6
Dinv38963 Davidia involucrata HOM05D001293 ORTHO05D001143 5.6e-06 55.1 74 56.8
MBI17_g45843_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 5.6e-06 55.1 72 54.2
Manes.14G026100 Manihot esculenta HOM05D001293 ORTHO05D001143 5.6e-06 55.1 94 48.9
PGR042G1643 Punica granatum HOM05D001293 ORTHO05D001143 5.6e-06 55.1 79 51.9
Rhsim07G0091900 Rhododendron simsii HOM05D001293 ORTHO05D001143 5.6e-06 55.1 95 48.4
THA.LOC104817285 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 5.6e-06 55.1 122 39.3
BcaC02g07057 Brassica carinata HOM05D001293 ORTHO05D001143 7.3e-06 54.7 96 44.8
AUR62017251 Chenopodium quinoa HOM05D001293 ORTHO05D001143 7.3e-06 54.7 74 52.7
Duzib205G0129 Durio zibethinus HOM05D001293 ORTHO05D001143 7.3e-06 54.7 94 46.8
HanXRQChr07g0187071 Helianthus annuus HOM05D001293 ORTHO05D001143 7.3e-06 54.7 104 31.7
MBI18_g09034_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 7.3e-06 54.7 71 42.3
Phvul.002G287608 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 7.3e-06 54.7 96 34.4
A09p53330 Brassica napus HOM05D001293 ORTHO05D001143 9.5e-06 54.3 149 36.2
BolC8t51195H Brassica oleracea HOM05D001293 ORTHO05D001143 9.5e-06 54.3 149 36.2
Carub.0005s2792 Capsella rubella HOM05D001293 ORTHO05D001143 9.5e-06 54.3 96 43.8
ECA233G2773 Erigeron canadensis HOM05D001293 ORTHO05D001143 9.5e-06 54.3 77 41.6
Eucgr.A02793 Eucalyptus grandis HOM05D001293 ORTHO05D001143 9.5e-06 54.3 76 52.6
Glyma.20G158200 Glycine max HOM05D001293 ORTHO05D001143 9.5e-06 54.3 94 45.7
Lj1g0011057 Lotus japonicus HOM05D001293 ORTHO05D001143 9.5e-06 54.3 95 48.4
THA.LOC104798926 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 9.5e-06 54.3 97 47.4
Thecc.03G275500 Theobroma cacao HOM05D001293 ORTHO05D001143 9.5e-06 54.3 80 51.2
TAR374G0925 Trochodendron aralioides HOM05D001293 ORTHO05D001143 9.5e-06 54.3 76 52.6
TAR636G2976 Trochodendron aralioides HOM05D001293 ORTHO05D001143 9.5e-06 54.3 94 38.3
Zm00001eb427400 Zea mays HOM05D001293 ORTHO05D001143 9.5e-06 54.3 79 53.2


User provided reference genes

Program Settings