Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 2.2e-31 138.3 68 100.0
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 6.7e-28 126.7 68 91.2
Carub.0002s0297 Capsella rubella HOM05D007037 ORTHO05D006691 3.7e-26 120.9 68 85.3
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 8.2e-26 119.8 64 92.2
BcaB07g31300 Brassica carinata HOM05D007037 ORTHO05D006691 1.9e-22 108.6 69 85.5
A09p16540 Brassica napus HOM05D007037 ORTHO05D006691 4.2e-22 107.5 68 83.8
BraA09t37292Z Brassica rapa HOM05D007037 ORTHO05D006691 4.2e-22 107.5 68 83.8
BcaC04g22368 Brassica carinata HOM05D007037 ORTHO05D006691 3.6e-21 104.4 62 85.5
C09p20100 Brassica napus HOM05D007037 ORTHO05D006691 3.6e-21 104.4 62 85.5
BolC9t54919H Brassica oleracea HOM05D007037 ORTHO05D006691 3.6e-21 104.4 62 85.5
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 1.8e-17 92.0 72 68.1
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 2.4e-17 91.7 71 66.2
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 3.1e-17 91.3 71 66.2
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 9.1e-17 89.7 71 66.2
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 2.0e-16 88.6 71 64.8
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 7.7e-16 86.7 72 63.9
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 7.7e-16 86.7 72 63.9
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 3.8e-15 84.3 72 63.9
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 8.5e-15 83.2 72 61.1
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 1.1e-14 82.8 70 62.9
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 6.1e-13 77.0 67 61.2
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 4.5e-08 60.8 66 47.0
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 7.7e-08 60.1 83 41.0
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 7.7e-08 60.1 64 54.7
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.3e-07 59.3 76 44.7
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.3e-07 59.3 80 43.8
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 1.7e-07 58.9 56 57.1
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 6.6e-07 57.0 65 53.8
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 1.1e-06 56.2 57 52.6
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.1e-06 56.2 76 47.4
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.1e-06 56.2 65 52.3
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.5e-06 55.8 84 45.2
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 1.5e-06 55.8 74 44.6
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 1.5e-06 55.8 63 46.0
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 1.5e-06 55.8 77 44.2
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.9e-06 55.5 37 75.7
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.9e-06 55.5 84 41.7
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 1.9e-06 55.5 65 50.8
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 1.9e-06 55.5 65 50.8
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 2.5e-06 55.1 76 43.4
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 3.3e-06 54.7 42 59.5
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 3.3e-06 54.7 76 47.4
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 3.3e-06 54.7 77 40.3
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 3.3e-06 54.7 35 68.6
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 4.2e-06 54.3 77 45.5
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 4.2e-06 54.3 78 41.0
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 4.2e-06 54.3 82 42.7
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 4.2e-06 54.3 77 39.0
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 5.5e-06 53.9 67 40.3
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 5.5e-06 53.9 76 46.1
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 5.5e-06 53.9 75 42.7
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 7.2e-06 53.5 76 39.5
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 9.5e-06 53.1 78 41.0
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 9.5e-06 53.1 78 41.0
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 9.5e-06 53.1 64 51.6


User provided reference genes

Program Settings