Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.8e-72 275.8 138 100.0
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.0e-59 233.4 142 85.2
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.6e-50 202.2 127 78.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.6e-50 202.2 127 78.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.3e-50 201.8 132 77.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 9.7e-50 200.3 127 77.2
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.2e-49 199.1 127 78.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.8e-48 196.1 128 78.1
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.1e-48 195.3 126 75.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.3e-48 194.5 127 74.8
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-47 191.8 127 74.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.5e-47 191.4 132 72.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.9e-47 191.0 127 74.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.0e-46 190.3 127 73.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-46 189.9 126 74.6
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.3e-46 189.9 126 74.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.9e-46 188.7 132 71.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.5e-46 187.6 126 73.8
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.7e-44 182.2 126 75.4
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 4.7e-44 181.4 123 67.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 4.0e-43 178.3 127 70.9
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 4.0e-43 178.3 127 70.9
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 5.2e-43 177.9 131 71.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.2e-43 177.9 124 65.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.6e-42 175.6 124 67.7
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 4.4e-42 174.9 125 66.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.7e-42 174.5 124 66.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 5.7e-42 174.5 123 65.9
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.7e-41 172.9 124 66.9
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 4.8e-41 171.4 122 65.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.3e-41 171.0 124 64.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.3e-41 171.0 123 65.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 8.3e-41 170.6 125 64.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-40 170.2 134 67.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.1e-40 170.2 124 66.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.4e-40 169.9 125 65.6
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.4e-40 169.9 123 64.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.4e-40 169.9 126 63.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.4e-40 169.1 122 69.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.4e-40 169.1 124 66.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.1e-40 168.7 124 65.3
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 7.0e-40 167.5 123 65.0
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.1e-40 167.2 128 61.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.1e-40 167.2 128 61.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.1e-40 167.2 125 61.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.1e-40 167.2 123 65.9
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.2e-39 166.8 125 62.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.2e-39 166.8 128 60.9
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.2e-39 166.8 125 64.0
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.7e-39 165.6 125 62.4
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.5e-39 165.2 122 68.0
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 3.5e-39 165.2 125 62.4
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 7.7e-39 164.1 123 63.4
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.0e-38 163.7 113 71.7
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.3e-38 163.3 124 62.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.3e-38 163.3 123 63.4
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.2e-38 162.5 128 60.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.9e-38 162.2 124 63.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.9e-38 162.2 124 62.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.9e-38 162.2 125 62.4
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 3.8e-38 161.8 125 63.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.0e-38 161.4 124 62.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.0e-38 161.4 123 61.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.0e-38 161.4 125 59.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.0e-38 161.4 120 62.5
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.5e-38 161.0 105 76.2
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 8.5e-38 160.6 124 61.3
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 8.5e-38 160.6 125 60.8
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.5e-37 159.8 123 61.8
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.9e-37 159.5 126 62.7
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.5e-37 159.1 126 57.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 3.2e-37 158.7 123 61.8
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.2e-37 158.7 123 61.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 4.2e-37 158.3 125 60.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.5e-37 157.9 123 61.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 5.5e-37 157.9 127 56.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.5e-37 157.9 125 58.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 7.2e-37 157.5 123 61.0
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 7.2e-37 157.5 124 58.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 9.4e-37 157.1 125 60.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.2e-36 156.8 122 61.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.2e-36 156.8 125 60.8
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.6e-36 156.4 125 58.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-36 156.4 123 61.8
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.6e-36 156.4 127 55.9
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.7e-36 155.6 118 60.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.7e-36 154.8 123 61.0
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.1e-36 154.5 123 58.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 6.1e-36 154.5 125 61.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 6.1e-36 154.5 123 60.2
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 8.0e-36 154.1 123 60.2
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.0e-36 154.1 123 56.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 8.0e-36 154.1 124 60.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 8.0e-36 154.1 117 61.5
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-35 153.7 123 57.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.3e-35 152.5 123 59.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 3.0e-35 152.1 122 61.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.0e-35 152.1 123 57.7
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.0e-35 152.1 123 57.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 4.0e-35 151.8 122 58.2
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 5.2e-35 151.4 123 55.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 5.2e-35 151.4 123 60.2
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.2e-35 151.4 124 58.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 8.8e-35 150.6 122 61.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-34 150.2 123 56.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.2e-34 150.2 123 57.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.4e-34 148.3 127 57.5
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 5.7e-34 147.9 123 57.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.7e-34 147.9 123 57.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.7e-34 147.9 125 55.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-33 146.7 132 60.6
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 2.2e-33 146.0 124 56.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.2e-33 146.0 125 59.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.2e-33 146.0 123 56.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.8e-33 145.6 124 58.1
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.9e-33 144.8 125 56.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.3e-33 144.1 118 56.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.8e-32 142.9 126 54.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.8e-32 142.9 123 55.3
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 5.0e-30 134.8 128 54.7
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 2.5e-29 132.5 84 75.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.6e-28 128.6 101 59.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 8.0e-28 127.5 129 46.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.0e-27 125.2 85 65.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.9e-25 119.0 103 53.4
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 4.9e-25 118.2 85 64.7
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.8e-24 116.3 113 51.3
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.8e-24 116.3 121 44.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.2e-24 115.5 88 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.1e-24 115.2 129 41.9
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 7.0e-24 114.4 123 43.1
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.7e-23 112.5 138 39.9
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.7e-22 109.8 133 40.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.0e-19 100.5 124 46.0
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.8e-19 99.8 60 73.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.1e-19 99.0 123 46.3
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.1e-19 99.0 124 45.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 4.0e-19 98.6 78 61.5
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.8e-19 97.8 124 45.2
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 8.9e-19 97.4 122 38.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.7e-17 92.0 66 60.6
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.4e-16 90.1 93 44.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.1e-16 88.6 72 51.4
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 7.8e-15 84.3 125 39.2
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 6.8e-11 71.2 63 47.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.2e-10 70.5 77 41.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.8e-10 68.2 45 62.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.5e-10 67.8 45 64.4
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 8.3e-09 64.3 45 71.1
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 6.0e-07 58.2 86 37.2
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.7e-06 56.6 65 41.5
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 3.0e-06 55.8 104 30.8


User provided reference genes

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