Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.5e-133 479.6 252 100.0
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 8.9e-126 453.8 252 95.6
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.2e-114 416.8 254 88.2
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 1.9e-99 366.3 248 82.3
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 9.0e-94 347.4 252 79.4
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.2e-93 347.1 252 79.4
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-93 347.1 252 79.4
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.2e-93 347.1 252 79.4
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 6.4e-92 341.3 251 78.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.9e-91 339.7 252 78.2
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 4.6e-90 335.1 250 78.8
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.7e-89 330.9 250 74.4
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 1.6e-87 326.6 250 74.8
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 1.6e-87 326.6 250 74.8
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 1.6e-87 326.6 250 74.8
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 4.9e-84 315.1 250 73.2
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 4.9e-84 315.1 250 73.2
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 7.1e-83 311.2 236 75.8
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 8.5e-60 234.6 254 61.0
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.3e-46 188.7 277 53.1
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 7.0e-46 188.3 273 52.0
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 9.1e-46 188.0 284 51.4
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 2.7e-45 186.4 284 51.1
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 8.3e-39 164.9 300 48.3
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 5.4e-38 162.2 119 77.3
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 5.9e-37 158.7 288 46.2
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.8e-34 149.8 270 45.6
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 8.0e-34 148.3 265 48.3
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 1.4e-33 147.5 203 53.2
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 3.0e-33 146.4 203 53.2
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 4.1e-30 136.0 272 44.5
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 2.0e-29 133.7 277 43.0
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 2.3e-28 130.2 277 41.9
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 2.3e-28 130.2 277 41.9
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 4.3e-27 125.9 277 42.2
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 8.9e-25 118.2 269 41.6
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.5e-24 117.5 275 40.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.8e-24 115.5 275 40.7
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 6.4e-23 112.1 280 40.7
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 1.1e-22 111.3 273 39.2
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.4e-22 110.2 275 38.9
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 5.4e-22 109.0 283 40.3
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.7e-21 106.7 304 38.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 3.5e-21 106.3 272 39.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.8e-21 105.1 295 39.7
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 7.8e-21 105.1 306 38.9
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.0e-20 104.8 295 39.7
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.7e-20 104.0 295 40.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.3e-20 103.6 275 38.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.2e-18 97.8 288 37.2
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 8.9e-17 91.7 303 36.0
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.6e-16 90.1 243 39.1
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.3e-15 87.8 285 36.8
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 3.7e-15 86.3 252 38.1
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 4.9e-15 85.9 289 35.6
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 4.9e-15 85.9 288 34.7
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.4e-15 85.5 294 34.7
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.4e-14 83.6 316 32.0
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.1e-14 82.8 294 34.4
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 5.4e-14 82.4 289 34.9
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 7.1e-14 82.0 266 36.1
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.2e-14 81.6 262 38.5
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.2e-14 81.6 262 38.5
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.6e-13 80.9 263 37.6
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.1e-13 80.5 293 33.4
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.7e-13 80.1 246 36.6
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 4.6e-13 79.3 288 36.8
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 7.8e-13 78.6 293 35.2
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-12 78.2 290 34.5
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.0e-12 78.2 263 36.9
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.3e-12 77.8 249 36.9
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.7e-12 77.4 217 37.3
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 2.3e-12 77.0 290 33.8
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 3.0e-12 76.6 292 33.9
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.0e-12 76.6 297 33.0
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.0e-12 76.6 316 33.5
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 8.6e-12 75.1 265 37.0
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.1e-11 74.7 291 32.6
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.5e-11 74.3 278 35.3
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.9e-11 73.9 289 36.0
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.5e-11 73.6 301 32.9
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.5e-11 73.6 264 35.6
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.3e-11 72.8 282 34.0
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 4.3e-11 72.8 288 34.7
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 5.6e-11 72.4 210 37.6
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 7.3e-11 72.0 293 34.1
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 7.3e-11 72.0 268 34.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.2e-10 71.2 247 35.6
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 4.7e-10 69.3 294 32.3
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.7e-10 69.3 296 30.7
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-09 68.2 287 30.0
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.1e-09 68.2 318 31.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.4e-09 67.8 273 33.0
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.8e-09 67.4 177 40.1
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.8e-09 67.4 317 30.3
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.3e-09 67.0 197 35.5
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 6.8e-09 65.5 283 32.9
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.9e-09 65.1 307 31.9
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 8.9e-09 65.1 240 33.8
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.4e-08 62.8 264 33.3
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.8e-08 62.4 285 30.5
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 7.6e-08 62.0 281 33.1
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.3e-07 61.2 287 30.0
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 1.3e-07 61.2 270 30.7
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-07 61.2 261 35.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-07 61.2 261 35.6
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 1.7e-07 60.8 332 31.6
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.9e-07 60.1 247 34.0
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 2.9e-07 60.1 280 33.2
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 2.9e-07 60.1 256 35.9
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 6.4e-07 58.9 243 35.0
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 6.4e-07 58.9 314 31.2
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 8.3e-07 58.5 235 32.8
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.1e-06 58.2 298 29.9
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.9e-06 57.4 203 29.1
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.9e-06 57.4 262 30.9
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.9e-06 57.4 240 30.8
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.4e-06 57.0 238 33.6
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 2.4e-06 57.0 281 31.0
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 2.4e-06 57.0 254 32.7
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 2.4e-06 57.0 246 29.3
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.4e-06 57.0 307 31.3
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.1e-06 56.2 287 31.7
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.1e-06 56.2 287 31.7
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 4.1e-06 56.2 267 30.0
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 5.4e-06 55.8 291 30.9
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.1e-06 55.5 262 32.8
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 7.1e-06 55.5 168 33.3


User provided reference genes

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