Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1612.4 841 100.0
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1463.7 844 91.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1228.0 856 78.3
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1216.1 871 77.5
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1188.3 855 77.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.4e-305 1052.7 872 68.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.4e-300 1035.4 908 65.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 4.1e-300 1034.6 876 66.8
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-294 1016.1 874 66.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.8e-293 1011.1 877 67.0
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.4e-292 1008.8 875 65.5
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.5e-289 998.8 864 66.4
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 9.4e-289 996.9 892 65.0
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 5.2e-287 991.1 935 62.8
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 5.7e-286 987.6 863 65.8
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.3e-285 986.5 863 65.8
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.2e-285 985.7 875 64.8
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-284 983.4 865 65.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-284 983.4 865 65.5
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.6e-280 969.5 798 69.2
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-275 952.2 934 61.2
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.8e-270 933.7 853 65.2
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 9.2e-268 927.2 895 62.2
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 7.2e-204 714.9 913 49.2
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 8.8e-202 708.0 900 48.8
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.9e-197 693.0 929 47.4
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 6.5e-197 691.8 908 48.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 6.5e-197 691.8 893 49.0
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.0e-194 684.5 911 47.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.1e-193 681.0 896 47.8
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.6e-193 679.9 902 47.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 5.0e-189 665.6 925 46.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.2e-187 661.0 849 49.4
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.0e-185 653.7 887 47.6
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.2e-184 650.2 951 44.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.8e-184 649.8 822 48.8
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 3.7e-184 649.4 913 47.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.8e-183 647.1 793 50.7
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 9.1e-183 644.8 890 48.4
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.6e-182 644.0 990 44.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.6e-182 643.3 897 48.6
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.9e-181 639.8 909 47.1
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.9e-181 639.8 877 47.4
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 5.0e-181 639.0 905 46.9
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.0e-181 639.0 913 46.1
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.5e-180 637.5 900 46.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.9e-180 637.1 940 45.6
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 3.2e-180 636.3 900 46.7
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.0e-178 631.3 960 43.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.8e-178 630.6 890 46.3
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.8e-178 630.6 995 43.4
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 8.8e-178 628.2 970 43.8
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.2e-177 627.9 797 48.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.3e-177 626.3 919 46.6
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 4.4e-177 625.9 931 44.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.8e-176 622.5 807 48.1
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 8.2e-176 621.7 785 48.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-175 621.3 899 46.7
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.1e-175 619.4 892 46.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.3e-175 619.0 911 45.8
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 5.3e-175 619.0 895 47.8
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.6e-174 617.5 917 45.4
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.6e-174 617.5 811 48.7
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.6e-174 617.5 881 47.0
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.0e-173 614.8 824 47.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.3e-173 614.4 792 49.2
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.5e-172 610.9 791 46.9
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.9e-172 610.5 928 44.0
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.5e-172 610.1 934 44.8
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 7.2e-172 608.6 891 45.2
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 9.4e-172 608.2 806 47.8
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.6e-171 607.4 796 46.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.6e-171 607.4 804 47.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 4.7e-171 605.9 826 46.0
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.7e-171 605.9 928 44.6
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 8.0e-171 605.1 928 43.8
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.0e-170 604.7 776 46.3
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.0e-170 602.8 878 45.6
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.8e-170 601.7 769 48.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 5.7e-169 599.0 918 44.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.5e-169 598.6 909 44.2
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-168 597.8 900 45.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.8e-168 596.7 1005 41.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 8.3e-168 595.1 868 45.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.8e-167 594.0 961 44.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.4e-167 592.4 961 43.8
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.1e-167 591.7 963 44.0
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.6e-165 585.1 959 44.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.6e-165 585.1 959 43.8
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 8.6e-165 585.1 923 44.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.5e-164 583.6 907 43.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.3e-164 583.2 907 43.3
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 4.2e-164 582.8 1027 42.0
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.1e-163 580.5 728 48.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.3e-162 577.0 841 45.1
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.4e-161 572.8 791 45.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.7e-160 570.9 915 44.2
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.4e-159 567.0 799 45.4
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.6e-158 564.3 822 44.6
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 5.9e-158 562.4 786 44.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.0e-157 559.3 787 44.7
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 5.0e-157 559.3 1094 38.3
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 4.3e-156 556.2 772 45.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.3e-156 555.4 816 43.0
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.3e-156 555.4 816 43.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 3.6e-155 553.1 979 41.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 2.6e-153 547.0 882 43.3
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-153 546.6 839 43.5
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.3e-152 542.0 931 41.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-151 541.6 998 39.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.9e-151 540.8 828 44.3
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 4.1e-151 539.7 893 42.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-150 537.7 888 41.9
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 4.6e-150 536.2 917 39.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.3e-149 533.9 831 43.2
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.9e-148 530.8 806 43.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.6e-147 527.7 884 41.4
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 2.1e-147 527.3 1003 38.5
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.5e-145 521.2 865 41.7
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-140 505.0 785 43.9
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 7.3e-140 502.3 880 40.3
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.8e-139 500.4 762 44.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.9e-136 490.3 813 39.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.8e-128 463.4 947 37.7
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 5.1e-125 453.0 890 37.5
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 8.4e-120 435.6 914 38.9
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.7e-117 425.6 751 38.9
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 4.8e-115 419.9 910 38.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 7.1e-111 406.0 789 38.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.4e-98 365.2 828 35.5
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.4e-98 365.2 828 35.5
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 5.3e-98 363.2 883 34.0
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.9e-87 328.2 673 37.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 7.9e-86 322.8 530 43.0
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.4e-85 322.0 768 33.3
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 4.3e-84 317.0 368 52.2
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.2e-79 300.8 333 52.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.2e-67 259.6 285 50.2
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-62 245.7 395 44.1
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.6e-54 218.8 464 37.3
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 8.8e-53 213.0 953 26.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 7.5e-52 209.9 246 49.6
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.8e-48 197.6 372 42.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 5.0e-48 197.2 178 65.2
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 5.5e-47 193.7 259 43.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 8.0e-46 189.9 378 38.4
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.9e-40 171.4 137 66.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.6e-33 149.1 457 32.2
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.2e-29 134.0 222 38.3
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-25 122.9 142 49.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.6e-25 122.5 157 50.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.5e-25 121.3 156 48.1
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.3e-24 118.6 111 55.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 5.6e-23 114.0 158 42.4
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.1e-21 109.8 159 45.3
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-20 105.1 86 62.8
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.7e-19 102.4 92 64.1
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.7e-16 92.4 79 60.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.9e-16 91.3 89 55.1
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 8.6e-16 90.1 66 63.6
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-14 86.3 71 62.0
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.6e-14 85.9 89 52.8
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-13 83.2 104 44.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.1e-13 83.2 97 50.5
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-12 79.0 61 63.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.6e-12 78.6 63 69.8
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 3.4e-12 78.2 73 61.6
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 5.8e-12 77.4 70 58.6
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 5.8e-12 77.4 120 40.0
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 9.9e-12 76.6 81 53.1
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 8.4e-11 73.6 92 42.4
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 1.6e-09 69.3 156 35.9
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 3.9e-08 64.7 86 41.9
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 2.1e-06 58.9 62 46.8
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.8e-06 57.8 47 63.8
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 4.8e-06 57.8 60 53.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 6.2e-06 57.4 57 50.9
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 8.1e-06 57.0 38 63.2


User provided reference genes

Program Settings