Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 0.0e+00 1102.8 624 100.0
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 8.5e-311 1069.7 624 95.0
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.0e-299 1031.9 626 90.3
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 4.1e-289 997.7 633 88.3
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.3e-284 981.9 619 91.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 3.6e-277 958.0 624 86.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 3.6e-277 958.0 624 86.1
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-276 956.4 624 85.9
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 7.5e-275 950.3 627 85.6
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.4e-273 946.0 626 85.3
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.4e-273 946.0 626 85.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.2e-273 944.9 624 84.6
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-264 916.4 624 82.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.2e-264 916.4 624 82.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.3e-239 832.4 616 76.5
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 9.6e-238 827.0 562 83.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.6e-237 826.2 590 79.8
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.4e-217 760.0 662 66.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 4.2e-217 758.4 423 92.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.5e-214 750.0 667 65.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 9.7e-214 747.3 672 65.2
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.8e-213 745.7 667 65.2
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.1e-212 743.8 674 65.0
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 3.1e-212 742.3 672 62.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.3e-212 741.5 661 64.8
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 9.0e-212 740.7 667 64.9
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 9.0e-212 740.7 667 64.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.0e-211 739.6 673 64.9
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.4e-211 738.8 667 64.9
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 5.9e-211 738.0 675 65.0
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.9e-210 735.7 670 64.3
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.4e-209 733.4 669 64.3
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 5.5e-209 731.5 653 65.1
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.1e-208 729.6 678 63.9
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.1e-208 729.6 659 64.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.7e-208 729.2 689 63.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 6.1e-208 728.0 499 79.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.8e-207 726.5 663 63.5
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.0e-207 725.7 678 63.9
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.1e-207 724.9 694 60.1
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 8.8e-207 724.2 636 65.6
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.3e-206 722.2 657 64.4
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.3e-206 721.8 636 65.3
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.4e-206 721.1 639 64.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.7e-205 719.9 673 64.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 8.2e-205 717.6 661 64.6
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 5.3e-204 714.9 662 63.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.5e-203 713.4 658 62.9
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.0e-203 713.0 646 63.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 2.2e-202 709.5 673 63.3
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 3.8e-202 708.8 646 65.2
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.1e-201 707.2 668 63.0
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.4e-201 706.8 683 62.5
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.1e-200 703.0 612 66.8
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.3e-199 699.5 664 64.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.9e-199 698.7 639 64.3
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.7e-199 698.0 723 59.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.4e-198 695.3 651 64.4
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.1e-196 690.6 680 62.2
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.4e-196 689.5 545 71.9
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.1e-196 689.1 683 60.8
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 4.1e-196 688.7 690 61.4
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.0e-195 686.4 689 61.4
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.0e-194 684.1 683 61.8
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.7e-194 683.3 609 65.4
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 5.0e-194 681.8 664 61.4
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.2e-193 679.1 682 61.0
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.2e-193 679.1 651 63.4
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 9.4e-193 677.6 538 71.4
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.7e-192 676.0 626 62.9
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.1e-192 674.9 664 61.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 3.3e-190 669.1 633 63.2
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.4e-190 668.7 510 72.0
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.3e-189 667.2 619 63.3
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.7e-189 666.8 646 61.9
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.2e-186 656.4 793 55.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.5e-185 653.7 673 60.2
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.5e-185 653.7 636 61.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 9.4e-185 651.0 682 57.8
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.6e-184 649.0 648 60.8
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.8e-183 646.7 675 56.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.3e-183 646.4 640 60.2
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 8.8e-183 644.4 614 63.0
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.5e-182 643.7 512 72.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.5e-182 643.7 542 68.8
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 9.7e-182 641.0 677 57.9
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 8.3e-181 637.9 677 57.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 5.2e-175 618.6 726 51.9
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.7e-174 615.1 512 68.4
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.7e-171 606.3 712 54.9
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 3.2e-164 582.8 496 69.2
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 3.2e-164 582.8 636 57.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.7e-162 577.0 510 60.0
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 2.5e-161 573.2 664 52.0
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 7.0e-156 555.1 460 68.5
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 7.3e-153 545.0 676 52.5
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.6e-152 542.7 658 50.2
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.6e-147 525.8 629 54.1
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.3e-146 523.5 510 56.7
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.0e-142 510.4 674 47.8
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 9.9e-142 508.1 690 51.0
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 4.1e-140 502.7 612 52.5
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 6.0e-139 498.8 613 52.9
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.3e-137 492.7 685 47.2
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.2e-136 488.8 404 69.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.8e-128 463.4 457 61.9
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.9e-121 440.7 526 50.0
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.0e-118 430.6 725 41.9
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 9.9e-118 428.3 572 47.2
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.1e-111 408.3 621 43.6
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 5.5e-108 396.0 503 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.6e-104 384.4 548 44.9
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.3e-101 374.8 663 41.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.3e-98 364.0 544 46.1
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.1e-97 361.7 651 41.2
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 9.0e-95 352.1 278 68.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 5.0e-93 346.3 309 73.5
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.2e-86 325.1 310 68.7
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 8.8e-74 282.3 276 68.8
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.0e-67 259.2 279 54.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.0e-67 259.2 180 84.4
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 6.1e-59 233.0 312 52.9
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.4e-49 200.3 301 41.5
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.2e-47 194.1 180 76.7
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.6e-45 186.0 292 47.6
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-44 185.7 122 81.1
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 8.9e-42 176.0 103 91.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.6e-36 156.8 281 42.7
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-35 155.6 200 49.5
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 4.7e-35 153.7 230 54.8
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-34 151.4 91 84.6
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-34 151.4 91 84.6
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-32 144.8 81 79.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-29 136.0 288 33.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-24 117.1 89 75.3
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.9e-23 115.2 83 80.7
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 7.1e-23 113.2 224 34.8
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.1e-19 101.7 167 39.5
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.8e-18 98.6 316 25.6
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.4e-18 98.2 58 75.9
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 9.3e-15 86.3 51 82.4
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.0e-13 82.8 266 30.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-13 82.0 63 61.9
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 7.6e-09 66.6 53 56.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.2e-07 61.2 55 50.9
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.3e-07 59.7 36 86.1
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 9.3e-07 59.7 90 48.9
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.7e-06 58.2 57 54.4
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.7e-06 58.2 57 54.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.5e-06 57.8 58 55.2
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-06 57.4 32 87.5


User provided reference genes

Program Settings