Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.8e-193 678.3 319 100.0
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.9e-133 479.6 305 76.1
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.5e-130 469.9 305 74.8
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.4e-128 463.4 303 71.9
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.6e-124 449.9 303 71.6
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 7.6e-122 441.0 279 75.3
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 3.8e-121 438.7 304 71.1
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 4.2e-112 408.7 321 62.0
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 1.6e-108 396.7 315 61.3
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 5.3e-107 391.7 309 62.8
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 5.4e-104 381.7 311 62.7
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 3.5e-103 379.0 304 63.8
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 6.0e-103 378.3 306 62.4
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 6.7e-94 348.2 310 58.1
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 1.9e-93 346.7 316 56.3
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 3.3e-93 345.9 316 59.2
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 6.2e-92 341.7 313 56.2
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 6.2e-92 341.7 314 56.1
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 6.2e-92 341.7 309 54.7
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 9.0e-91 337.8 307 56.0
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 2.6e-90 336.3 309 53.7
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 2.6e-90 336.3 309 53.7
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 3.4e-90 335.9 313 55.3
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 3.4e-90 335.9 314 55.1
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 1.7e-89 333.6 314 54.8
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 3.8e-89 332.4 315 55.6
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 5.0e-89 332.0 315 55.2
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 1.1e-88 330.9 304 53.9
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 3.2e-88 329.3 315 55.2
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 7.2e-88 328.2 315 54.9
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 4.6e-87 325.5 304 53.3
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 8.7e-86 321.2 308 54.5
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 1.6e-84 317.0 309 51.8
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 8.2e-84 314.7 320 53.4
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 8.2e-84 314.7 307 52.1
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 1.2e-82 310.8 317 53.3
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 1.2e-82 310.8 317 53.3
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 9.7e-77 291.2 258 54.3
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 2.5e-72 276.6 232 59.9
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 4.2e-72 275.8 277 52.0
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 3.3e-69 266.2 235 56.6
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 2.2e-65 253.4 304 44.1
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 5.9e-58 228.8 310 44.5
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 7.7e-58 228.4 331 42.3
Sp2g04350 Schrenkiella parvula HOM05D007901 ORTHO05D010902 4.2e-48 196.1 200 50.0
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 4.1e-43 179.5 282 39.7
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 4.1e-43 179.5 282 39.7
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.0e-42 177.2 403 34.0
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.5e-40 171.0 168 55.4
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 1.9e-40 170.6 158 58.9
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 1.3e-36 157.9 155 54.8
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 4.9e-36 156.0 252 39.7
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 5.6e-32 142.5 165 48.5
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 2.8e-31 140.2 258 36.8
BcaC04g21443 Brassica carinata HOM05D007901 ORTHO05D024420 4.7e-31 139.4 223 36.3
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.3e-30 137.1 148 54.7
C09p31720 Brassica napus HOM05D007901 ORTHO05D024420 3.1e-30 136.7 223 35.9
C09p31750 Brassica napus HOM05D007901 ORTHO05D024420 3.1e-30 136.7 223 35.9
BolC9t56032H Brassica oleracea HOM05D007901 ORTHO05D024420 3.1e-30 136.7 223 35.9
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 6.8e-30 135.6 174 43.1
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 6.8e-30 135.6 173 42.2
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 6.8e-30 135.6 173 42.2
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 6.8e-30 135.6 173 42.8
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 1.5e-29 134.4 173 42.2
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 9.8e-29 131.7 130 54.6
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.3e-28 131.3 166 41.6
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 2.2e-28 130.6 160 43.8
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 3.2e-27 126.7 143 54.5
BolC9t56027H Brassica oleracea HOM05D007901 ORTHO05D024420 5.4e-27 125.9 217 34.6
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 1.2e-26 124.8 156 42.9
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.6e-26 124.4 129 56.6
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 1.0e-25 121.7 161 42.2
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 5.6e-24 115.9 82 70.7
BcaC04g21438 Brassica carinata HOM05D007901 ORTHO05D095300 9.5e-24 115.2 203 33.5
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 1.3e-20 104.8 153 39.2
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 9.2e-19 98.6 201 34.8
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.3e-12 78.2 124 34.7
BcaC06g31810 Brassica carinata HOM05D007901 ORTHO05D092289 1.2e-10 71.6 67 52.2
Sp2g04410 Schrenkiella parvula HOM05D007901 ORTHO05D010902 6.6e-09 65.9 60 56.7
Lsat_1_v5_gn_6_38101 Lactuca sativa HOM05D000010 ORTHO05D000302 9.6e-08 62.0 144 31.9
RcHm_v2.0_Chr3g0481471 Rosa chinensis HOM05D000010 ORTHO05D000151 2.8e-07 60.5 362 21.8
CSS0020310 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D001550 6.2e-07 59.3 140 30.0
Cpa.g.sc286.12 Carica papaya HOM05D000010 ORTHO05D000302 8.1e-07 58.9 138 30.4
CiPaw.08G076900 Carya illinoinensis HOM05D000010 ORTHO05D000302 8.1e-07 58.9 168 28.6
Rhsim11G0196000 Rhododendron simsii HOM05D000010 ORTHO05D003912 8.1e-07 58.9 135 29.6
Actinidia05873 Actinidia chinensis HOM05D000010 ORTHO05D001550 1.1e-06 58.5 133 30.1
MD10G1133400 Malus domestica HOM05D000010 ORTHO05D003912 1.4e-06 58.2 185 26.5
CiPaw.02G045800 Carya illinoinensis HOM05D000010 ORTHO05D016909 1.8e-06 57.8 142 26.8
ECA246G3780 Erigeron canadensis HOM05D000010 ORTHO05D001550 1.8e-06 57.8 136 30.9
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-06 57.4 57 49.1
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 3.1e-06 57.0 135 31.1
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 3.1e-06 57.0 135 31.1
Prupe.8G174800 Prunus persica HOM05D000010 ORTHO05D003912 3.1e-06 57.0 188 24.5
Solyc10g055760.2 Solanum lycopersicum HOM05D000010 ORTHO05D003912 3.1e-06 57.0 140 30.0
Eucgr.F03588 Eucalyptus grandis HOM05D000010 ORTHO05D000302 4.0e-06 56.6 176 28.4
Gohir.A01G102200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 4.0e-06 56.6 138 31.2
Os06g0101800 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D049792 4.0e-06 56.6 123 30.9
Gohir.D01G087300 Gossypium hirsutum HOM05D000010 ORTHO05D000302 5.2e-06 56.2 138 31.2
Gorai.002G113300 Gossypium raimondii HOM05D000010 ORTHO05D000302 5.2e-06 56.2 138 31.2
Manes.05G126800 Manihot esculenta HOM05D000010 ORTHO05D000302 5.2e-06 56.2 138 30.4
Potri.002G005800 Populus trichocarpa HOM05D000010 ORTHO05D000302 5.2e-06 56.2 138 30.4
Zm00001eb379550 Zea mays HOM05D000010 ORTHO05D049792 5.2e-06 56.2 120 28.3
QL02p015462 Quercus lobata HOM05D000010 ORTHO05D000302 6.8e-06 55.8 101 36.6
CSS0021199 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 8.9e-06 55.5 135 28.1
CiPaw.07G134300 Carya illinoinensis HOM05D000010 ORTHO05D000302 8.9e-06 55.5 170 28.8
Potri.005G255900 Populus trichocarpa HOM05D000010 ORTHO05D000302 8.9e-06 55.5 138 30.4


User provided reference genes

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