Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.6e-194 681.8 323 100.0
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 3.8e-153 545.0 292 88.0
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 6.0e-151 537.7 321 80.7
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.4e-147 525.8 322 78.0
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 2.1e-143 512.7 315 77.1
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 9.3e-136 487.3 312 74.7
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.9e-128 463.0 303 71.9
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 3.2e-120 435.6 317 67.2
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 6.1e-119 431.4 323 64.7
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 5.7e-117 424.9 321 64.2
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.1e-115 420.6 337 61.7
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 4.5e-114 415.2 306 65.7
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 5.5e-112 408.3 315 61.9
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 2.2e-105 386.3 319 61.8
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 2.3e-102 376.3 328 56.4
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 3.0e-102 375.9 310 61.0
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.0e-101 373.2 306 57.8
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 8.5e-97 357.8 322 54.7
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 4.2e-96 355.5 322 54.3
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 4.2e-96 355.5 322 54.3
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 7.2e-96 354.8 317 56.5
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 3.0e-94 349.4 316 56.0
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 6.8e-94 348.2 317 55.2
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 1.5e-93 347.1 317 55.2
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 2.0e-93 346.7 308 56.2
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 2.6e-93 346.3 316 55.7
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 5.7e-93 345.1 316 52.5
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 7.5e-93 344.7 321 56.1
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 1.3e-92 344.0 318 56.3
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 1.1e-91 340.9 316 52.5
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 1.4e-91 340.5 318 55.7
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 1.4e-91 340.5 321 55.8
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 1.0e-89 334.3 320 52.8
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 2.3e-89 333.2 305 53.4
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 5.0e-89 332.0 330 55.2
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 3.2e-88 329.3 327 54.4
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 3.2e-88 329.3 327 54.4
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 1.7e-81 307.0 258 55.0
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 1.8e-75 287.0 277 52.0
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 2.7e-74 283.1 231 59.7
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 1.9e-72 276.9 253 55.3
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 2.9e-68 263.1 316 43.0
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 5.8e-61 238.8 315 44.8
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 1.9e-59 233.8 346 41.0
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 7.3e-48 195.3 309 40.8
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 7.3e-48 195.3 309 40.8
Sp2g04350 Schrenkiella parvula HOM05D007901 ORTHO05D010902 1.6e-47 194.1 195 48.2
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 3.1e-46 189.9 395 35.4
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 1.6e-42 177.6 159 56.6
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.1e-40 171.4 177 53.7
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 3.4e-37 159.8 259 40.2
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 3.4e-37 159.8 152 54.6
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 9.3e-35 151.8 263 38.8
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.3e-33 147.1 166 44.6
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 5.1e-33 146.0 173 43.9
C09p31720 Brassica napus HOM05D007901 ORTHO05D024420 6.7e-33 145.6 225 36.9
C09p31750 Brassica napus HOM05D007901 ORTHO05D024420 6.7e-33 145.6 225 36.9
BolC9t56032H Brassica oleracea HOM05D007901 ORTHO05D024420 6.7e-33 145.6 225 36.9
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 1.1e-32 144.8 173 43.9
BcaC04g21443 Brassica carinata HOM05D007901 ORTHO05D024420 1.5e-32 144.4 225 36.4
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 1.9e-32 144.1 165 46.7
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 4.3e-32 142.9 173 42.8
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 4.3e-32 142.9 173 42.8
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 7.4e-32 142.1 174 43.7
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 2.1e-31 140.6 134 56.7
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.8e-31 140.2 145 52.4
BolC9t56027H Brassica oleracea HOM05D007901 ORTHO05D024420 1.2e-29 134.8 219 35.6
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 1.5e-29 134.4 162 43.2
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 2.0e-29 134.0 172 41.9
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 9.9e-29 131.7 143 53.8
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 3.8e-28 129.8 158 42.4
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 6.4e-28 129.0 130 56.2
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 6.7e-25 119.0 82 69.5
BcaC04g21438 Brassica carinata HOM05D007901 ORTHO05D095300 5.6e-24 115.9 205 33.7
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 8.2e-23 112.1 152 38.8
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 5.5e-19 99.4 205 35.1
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.8e-14 84.3 119 39.5
Sp2g04410 Schrenkiella parvula HOM05D007901 ORTHO05D010902 5.3e-14 82.8 59 64.4
Sed0006043 Sechium edule HOM05D000010 ORTHO05D003912 7.9e-10 68.9 138 33.3
CSS0020310 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D001550 2.3e-09 67.4 186 28.5
Cpa.g.c33298 Carica papaya HOM05D000010 ORTHO05D000151 1.5e-08 64.7 145 31.0
BcaC06g31810 Brassica carinata HOM05D007901 ORTHO05D092289 1.9e-08 64.3 71 46.5
CiPaw.02G045800 Carya illinoinensis HOM05D000010 ORTHO05D016909 1.9e-08 64.3 142 28.9
Cc00_g14290 Coffea canephora HOM05D000010 ORTHO05D003912 1.9e-08 64.3 197 27.9
Prupe.2G202900 Prunus persica HOM05D000010 ORTHO05D015705 2.5e-08 63.9 135 26.7
Sed0010604 Sechium edule HOM05D000010 ORTHO05D003754 2.5e-08 63.9 138 26.8
CSS0021199 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 3.3e-08 63.5 135 28.9
Os06g0101800 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D049792 3.3e-08 63.5 123 32.5
Lj2A110T59 Lonicera japonica HOM05D000010 ORTHO05D000151 4.3e-08 63.2 169 27.8
MD01G1092200 Malus domestica HOM05D000010 ORTHO05D016337 1.3e-07 61.6 144 27.1
Potri.014G107900 Populus trichocarpa HOM05D000010 ORTHO05D010539 1.3e-07 61.6 207 24.6
SalBow5G1948 Salvia bowleyana HOM05D000010 ORTHO05D003912 1.3e-07 61.6 134 30.6
Lalb_Chr01g0001191 Lupinus albus HOM05D000010 ORTHO05D003912 1.7e-07 61.2 136 32.4
Manes.05G126800 Manihot esculenta HOM05D000010 ORTHO05D000302 1.7e-07 61.2 137 33.6
Potri.014G076000 Populus trichocarpa HOM05D000010 ORTHO05D010539 1.7e-07 61.2 140 28.6
Lalb_Chr19g0139581 Lupinus albus HOM05D000010 ORTHO05D003912 2.2e-07 60.8 222 26.1
Potri.002G005800 Populus trichocarpa HOM05D000010 ORTHO05D000302 2.2e-07 60.8 137 33.6
SalBow5G0396 Salvia bowleyana HOM05D000010 ORTHO05D003912 2.2e-07 60.8 134 30.6
Glyma.06G014900 Glycine max HOM05D000010 ORTHO05D000302 2.8e-07 60.5 171 29.8
Os10g0477600 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D003754 2.8e-07 60.5 140 30.0
Potri.005G255900 Populus trichocarpa HOM05D000010 ORTHO05D000302 2.8e-07 60.5 137 33.6
VMungo1127G0484 Vigna mungo HOM05D000010 ORTHO05D003912 2.8e-07 60.5 136 31.6
Actinidia05873 Actinidia chinensis HOM05D000010 ORTHO05D001550 3.7e-07 60.1 128 29.7
Cpa.g.sc286.12 Carica papaya HOM05D000010 ORTHO05D000302 3.7e-07 60.1 137 32.8
Prupe.5G006200 Prunus persica HOM05D000010 ORTHO05D000302 3.7e-07 60.1 139 33.1
GSVIVG01013419001 Vitis vinifera HOM05D000010 ORTHO05D000302 3.7e-07 60.1 137 32.8
CiPaw.08G076900 Carya illinoinensis HOM05D000010 ORTHO05D000302 4.8e-07 59.7 140 32.1
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 4.8e-07 59.7 137 33.6
MD01G1093500 Malus domestica HOM05D000010 ORTHO05D016337 4.8e-07 59.7 122 32.8
MD07G1162700 Malus domestica HOM05D000010 ORTHO05D016337 4.8e-07 59.7 148 26.4
Peaxi162Scf00182g00711 Petunia axillaris HOM05D000010 ORTHO05D000151 4.8e-07 59.7 145 30.3
Thecc.08G100600 Theobroma cacao HOM05D000010 ORTHO05D000302 4.8e-07 59.7 137 32.8
C05p51210 Brassica napus HOM05D021084 ORTHO05D012782 6.3e-07 59.3 61 47.5
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 6.3e-07 59.3 135 30.4
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 6.3e-07 59.3 135 30.4
CiPaw.07G134300 Carya illinoinensis HOM05D000010 ORTHO05D000302 6.3e-07 59.3 137 32.8
Gohir.A05G177600 Gossypium hirsutum HOM05D000010 ORTHO05D000302 6.3e-07 59.3 137 32.8
MD06G1004900 Malus domestica HOM05D000010 ORTHO05D000302 6.3e-07 59.3 138 32.6
Phvul.009G008000 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 6.3e-07 59.3 142 32.4
PGR031G0100 Punica granatum HOM05D000010 ORTHO05D000302 6.3e-07 59.3 153 32.0
Sabra05G0198100 Salix brachista HOM05D000010 ORTHO05D000302 8.2e-07 58.9 70 41.4
BcaC06g36216 Brassica carinata HOM05D000010 ORTHO05D003912 1.1e-06 58.5 137 30.7
C07p06450 Brassica napus HOM05D000010 ORTHO05D003912 1.1e-06 58.5 137 30.7
CARHR090150 Cardamine hirsuta HOM05D000010 ORTHO05D000302 1.1e-06 58.5 73 39.7
Duzib093G1080 Durio zibethinus HOM05D000010 ORTHO05D000302 1.1e-06 58.5 137 32.8
Lsat_1_v5_gn_6_38101 Lactuca sativa HOM05D000010 ORTHO05D000302 1.1e-06 58.5 167 29.9
Phvul.011G024700 Phaseolus vulgaris HOM05D000010 ORTHO05D003912 1.1e-06 58.5 135 31.1
Sopen10g025590 Solanum pennellii HOM05D000010 ORTHO05D003912 1.1e-06 58.5 135 28.9
vmacro17278 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 1.1e-06 58.5 99 36.4
Medtr8g023860 Medicago truncatula HOM05D000010 ORTHO05D010539 1.4e-06 58.2 136 27.9
Rhsim11G0196000 Rhododendron simsii HOM05D000010 ORTHO05D003912 1.4e-06 58.2 136 30.1
Sabra14G0056000 Salix brachista HOM05D000010 ORTHO05D010539 1.4e-06 58.2 129 29.5
vmacro05983 Vaccinium macrocarpon HOM05D000010 ORTHO05D001550 1.4e-06 58.2 140 30.7
EL10Ac9g21279 Beta vulgaris HOM05D000010 ORTHO05D003912 1.8e-06 57.8 137 29.9
MD01G1093700 Malus domestica HOM05D000010 ORTHO05D016337 1.8e-06 57.8 121 29.8
MD10G1133400 Malus domestica HOM05D000010 ORTHO05D003912 1.8e-06 57.8 135 30.4
Potri.002G182300 Populus trichocarpa HOM05D000010 ORTHO05D010539 1.8e-06 57.8 137 25.5
Manes.18G002500 Manihot esculenta HOM05D000010 ORTHO05D000302 2.4e-06 57.4 69 40.6
QL02p015462 Quercus lobata HOM05D000010 ORTHO05D000302 2.4e-06 57.4 202 28.2
QL02p055032 Quercus lobata HOM05D000010 ORTHO05D016909 2.4e-06 57.4 137 27.0
Solyc10g055760.2 Solanum lycopersicum HOM05D000010 ORTHO05D003912 2.4e-06 57.4 67 41.8
vmacro02313 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 2.4e-06 57.4 136 30.9
HPP92_020847 Vanilla planifolia HOM05D000010 ORTHO05D003754 2.4e-06 57.4 138 28.3
Zm00001eb191780 Zea mays HOM05D000010 ORTHO05D003754 2.4e-06 57.4 147 25.9
CAN.G919.44 Capsicum annuum HOM05D000010 ORTHO05D005236 3.1e-06 57.0 137 26.3
SHI07957 Sapria himalayana HOM05D000010 ORTHO05D000302 3.1e-06 57.0 67 40.3
Rhsim05G0049700 Rhododendron simsii HOM05D000010 ORTHO05D003912 4.1e-06 56.6 67 43.3
Rhsim10G0003400 Rhododendron simsii HOM05D000010 ORTHO05D001550 4.1e-06 56.6 141 32.6
AUR62015630 Chenopodium quinoa HOM05D000010 ORTHO05D000151 5.3e-06 56.2 164 27.4
Ciclev10016434m.g Citrus clementina HOM05D000010 ORTHO05D001550 5.3e-06 56.2 119 29.4
Dinv15679 Davidia involucrata HOM05D000010 ORTHO05D000302 5.3e-06 56.2 66 40.9
Thhalv10000520m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 5.3e-06 56.2 154 31.2
Hma1.2p1_0271F.1_g109130 Hydrangea macrophylla HOM05D000010 ORTHO05D003912 5.3e-06 56.2 135 28.9
Sc05g0000620 Simmondsia chinensis HOM05D000010 ORTHO05D003754 5.3e-06 56.2 87 32.2
THA.LOC104804049 Tarenaya hassleriana HOM05D000010 ORTHO05D003754 5.3e-06 56.2 143 25.9
TAR633G0192 Trochodendron aralioides HOM05D000010 ORTHO05D003754 5.3e-06 56.2 138 27.5
BolC7t41066H Brassica oleracea HOM05D000010 ORTHO05D003912 6.9e-06 55.8 137 29.9
COL.COLO4_07460 Corchorus olitorius HOM05D000010 ORTHO05D000302 6.9e-06 55.8 69 39.1
ECA246G3780 Erigeron canadensis HOM05D000010 ORTHO05D001550 6.9e-06 55.8 65 36.9
Gohir.A01G102200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 6.9e-06 55.8 69 40.6
Prupe.8G174800 Prunus persica HOM05D000010 ORTHO05D003912 6.9e-06 55.8 67 38.8
Ah.11g048160 Amaranthus hybridus HOM05D000010 ORTHO05D000302 9.1e-06 55.5 70 37.1
Gohir.D01G087300 Gossypium hirsutum HOM05D000010 ORTHO05D000302 9.1e-06 55.5 69 40.6
Gohir.D05G181000 Gossypium hirsutum HOM05D000010 ORTHO05D000302 9.1e-06 55.5 114 32.5
Gorai.002G113300 Gossypium raimondii HOM05D000010 ORTHO05D000302 9.1e-06 55.5 69 40.6
Gorai.009G186000 Gossypium raimondii HOM05D000010 ORTHO05D000302 9.1e-06 55.5 114 32.5
HanXRQChr05g0140421 Helianthus annuus HOM05D000010 ORTHO05D003912 9.1e-06 55.5 135 31.1
Lsat_1_v5_gn_6_87981 Lactuca sativa HOM05D000010 ORTHO05D000063 9.1e-06 55.5 118 26.3
MD01G1092500 Malus domestica HOM05D000010 ORTHO05D016337 9.1e-06 55.5 144 25.7
MD05G1130500 Malus domestica HOM05D000010 ORTHO05D003912 9.1e-06 55.5 67 38.8
SEGI_39977 Sequoiadendron giganteum HOM05D000010 ORTHO05D000151 9.1e-06 55.5 145 29.0
THA.LOC104812746 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 9.1e-06 55.5 70 34.3
HPP92_014757 Vanilla planifolia HOM05D000010 ORTHO05D003754 9.1e-06 55.5 66 39.4


User provided reference genes

Program Settings