Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.1e-197 692.2 348 100.0
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 7.6e-160 567.4 350 79.4
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 7.2e-134 481.1 307 72.6
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 3.0e-116 422.5 337 61.7
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 3.0e-116 422.5 339 62.8
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.5e-112 408.7 340 62.1
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 3.3e-110 402.5 305 66.9
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 2.8e-109 399.4 303 66.3
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 1.0e-108 397.5 310 63.9
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 3.4e-107 392.5 343 61.5
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 1.6e-104 383.6 308 61.0
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 7.8e-104 381.3 313 60.4
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.7e-103 380.2 306 62.4
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 1.5e-102 377.1 307 61.6
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 2.4e-97 359.8 310 59.7
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 5.4e-97 358.6 310 58.4
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 2.0e-96 356.7 310 59.0
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.7e-96 356.3 311 57.9
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 6.0e-96 355.1 312 58.0
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 1.0e-95 354.4 310 58.7
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 1.7e-95 353.6 312 58.3
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 3.0e-95 352.8 310 57.4
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 1.5e-94 350.5 303 57.8
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 1.5e-94 350.5 303 57.8
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 2.5e-94 349.7 303 57.4
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 7.3e-94 348.2 307 58.6
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 9.5e-94 347.8 312 57.4
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 9.5e-94 347.8 312 57.4
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 1.8e-92 343.6 304 56.9
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 2.3e-92 343.2 303 56.1
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.0e-92 342.4 339 55.2
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 5.2e-92 342.0 307 57.3
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 2.6e-91 339.7 303 55.4
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 7.5e-91 338.2 317 58.0
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 7.5e-91 338.2 317 58.0
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 1.2e-88 330.9 302 54.6
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 5.1e-87 325.5 313 54.6
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 4.9e-82 308.9 260 56.9
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 2.4e-76 290.0 231 62.3
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 2.6e-75 286.6 282 52.5
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 4.4e-75 285.8 213 63.8
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 1.3e-66 257.7 303 45.5
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 8.1e-61 238.4 329 42.9
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 7.6e-59 231.9 317 44.5
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.8e-53 213.4 394 37.3
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 6.5e-50 202.2 285 42.8
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 6.5e-50 202.2 285 42.8
Sp2g04350 Schrenkiella parvula HOM05D007901 ORTHO05D010902 5.7e-46 189.1 197 49.7
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 9.0e-44 181.8 152 61.2
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.8e-39 167.5 151 59.6
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 6.7e-39 165.6 259 40.9
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 5.7e-38 162.5 261 40.6
C09p31720 Brassica napus HOM05D007901 ORTHO05D024420 1.9e-33 147.5 229 39.7
C09p31750 Brassica napus HOM05D007901 ORTHO05D024420 1.9e-33 147.5 229 39.7
BolC9t56032H Brassica oleracea HOM05D007901 ORTHO05D024420 1.9e-33 147.5 229 39.7
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 5.5e-33 146.0 168 48.8
BcaC04g21443 Brassica carinata HOM05D007901 ORTHO05D024420 4.6e-32 142.9 229 38.9
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 3.9e-31 139.8 147 53.1
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 5.1e-31 139.4 160 48.1
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.0e-30 137.5 160 44.4
BolC9t56027H Brassica oleracea HOM05D007901 ORTHO05D024420 4.4e-30 136.3 223 38.6
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 4.4e-30 136.3 167 44.3
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.2e-29 134.0 146 55.5
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 4.8e-29 132.9 167 43.1
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 8.2e-29 132.1 159 44.7
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.4e-28 131.3 145 54.5
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 1.8e-28 131.0 168 44.6
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 1.8e-28 131.0 167 41.9
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 1.8e-28 131.0 167 41.9
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 6.9e-28 129.0 161 44.7
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 1.5e-27 127.9 130 53.8
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 2.9e-26 123.6 156 42.9
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 1.1e-25 121.7 91 67.0
BcaC04g21438 Brassica carinata HOM05D007901 ORTHO05D095300 6.7e-23 112.5 209 35.9
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 3.7e-21 106.7 208 36.5
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 1.6e-19 101.3 155 37.4
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 8.5e-18 95.5 119 44.5
Sp2g04410 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.4e-12 77.4 50 70.0
BcaC06g31810 Brassica carinata HOM05D007901 ORTHO05D092289 5.9e-11 72.8 73 52.1
CSS0020310 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D001550 8.5e-10 68.9 137 32.8
Sabra05G0198100 Salix brachista HOM05D000010 ORTHO05D000302 4.2e-09 66.6 158 29.1
Actinidia05873 Actinidia chinensis HOM05D000010 ORTHO05D001550 1.6e-08 64.7 128 32.8
Prupe.2G202900 Prunus persica HOM05D000010 ORTHO05D015705 2.7e-08 63.9 132 26.5
Thecc.08G100600 Theobroma cacao HOM05D000010 ORTHO05D000302 4.7e-08 63.2 101 37.6
Cc00_g14290 Coffea canephora HOM05D000010 ORTHO05D003912 6.1e-08 62.8 132 32.6
Prupe.5G006200 Prunus persica HOM05D000010 ORTHO05D000302 8.0e-08 62.4 71 42.3
SHI07957 Sapria himalayana HOM05D000010 ORTHO05D000302 1.4e-07 61.6 67 41.8
PGR102G1743 Punica granatum HOM05D000010 ORTHO05D000063 2.3e-07 60.8 230 24.3
Cpa.g.sc286.12 Carica papaya HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Eucgr.F03588 Eucalyptus grandis HOM05D000010 ORTHO05D000302 3.0e-07 60.5 101 36.6
Gohir.A01G102200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Gohir.A05G177600 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Gohir.D05G181000 Gossypium hirsutum HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Gorai.009G186000 Gossypium raimondii HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Manes.05G126800 Manihot esculenta HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Manes.18G002500 Manihot esculenta HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Potri.002G005800 Populus trichocarpa HOM05D000010 ORTHO05D000302 3.0e-07 60.5 69 42.0
Ciclev10017618m.g Citrus clementina HOM05D000010 ORTHO05D000151 4.0e-07 60.1 125 35.2
Haze_00314 Corylus avellana HOM05D000010 ORTHO05D164649 4.0e-07 60.1 314 22.6
Gohir.D01G087300 Gossypium hirsutum HOM05D000010 ORTHO05D000302 4.0e-07 60.1 69 42.0
Gorai.002G113300 Gossypium raimondii HOM05D000010 ORTHO05D000302 4.0e-07 60.1 69 42.0
MD06G1004900 Malus domestica HOM05D000010 ORTHO05D000302 4.0e-07 60.1 70 40.0
PGR031G0100 Punica granatum HOM05D000010 ORTHO05D000302 4.0e-07 60.1 109 34.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 5.2e-07 59.7 69 42.0
Potri.005G255900 Populus trichocarpa HOM05D000010 ORTHO05D000302 5.2e-07 59.7 69 42.0
QL02p098785 Quercus lobata HOM05D000010 ORTHO05D000063 5.2e-07 59.7 138 29.0
AT1G76420 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 6.8e-07 59.3 135 34.1
CiPaw.02G045800 Carya illinoinensis HOM05D000010 ORTHO05D016909 6.8e-07 59.3 139 28.8
CiPaw.08G076900 Carya illinoinensis HOM05D000010 ORTHO05D000302 6.8e-07 59.3 94 35.1
MD01G1093500 Malus domestica HOM05D000010 ORTHO05D016337 6.8e-07 59.3 120 31.7
RcHm_v2.0_Chr7g0216521 Rosa chinensis HOM05D000010 ORTHO05D000302 6.8e-07 59.3 70 41.4
GSVIVG01013419001 Vitis vinifera HOM05D000010 ORTHO05D000302 6.8e-07 59.3 69 40.6
CiPaw.07G134300 Carya illinoinensis HOM05D000010 ORTHO05D000302 8.8e-07 58.9 69 40.6
COL.COLO4_07460 Corchorus olitorius HOM05D000010 ORTHO05D000302 8.8e-07 58.9 69 40.6
QL02p015462 Quercus lobata HOM05D000010 ORTHO05D000302 8.8e-07 58.9 69 40.6
Sed0006043 Sechium edule HOM05D000010 ORTHO05D003912 8.8e-07 58.9 134 28.4
Duzib093G1080 Durio zibethinus HOM05D000010 ORTHO05D000302 1.2e-06 58.5 69 40.6
Potri.014G076000 Populus trichocarpa HOM05D000010 ORTHO05D010539 1.2e-06 58.5 144 26.4
Ciclev10001403m.g Citrus clementina HOM05D000010 ORTHO05D000302 1.5e-06 58.2 69 40.6
FAN04G0372 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.5e-06 58.2 69 42.0
Peaxi162Scf00182g00711 Petunia axillaris HOM05D000010 ORTHO05D000151 1.5e-06 58.2 123 34.1
SalBow5G1948 Salvia bowleyana HOM05D000010 ORTHO05D003912 1.5e-06 58.2 131 29.8
FvH4_5g25960 Fragaria vesca HOM05D000010 ORTHO05D000302 2.0e-06 57.8 69 40.6
vmacro17278 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 2.0e-06 57.8 108 35.2
Dinv15679 Davidia involucrata HOM05D000010 ORTHO05D000302 2.6e-06 57.4 101 33.7
ECA246G3780 Erigeron canadensis HOM05D000010 ORTHO05D001550 2.6e-06 57.4 78 35.9
ATR0579G041 Amborella trichopoda HOM05D000010 ORTHO05D000063 3.4e-06 57.0 138 31.2
CARHR090150 Cardamine hirsuta HOM05D000010 ORTHO05D000302 3.4e-06 57.0 73 38.4
MD07G1162700 Malus domestica HOM05D000010 ORTHO05D016337 3.4e-06 57.0 144 25.7
QL01p010645 Quercus lobata HOM05D000010 ORTHO05D337182 3.4e-06 57.0 144 32.6
Rhsim11G0196000 Rhododendron simsii HOM05D000010 ORTHO05D003912 3.4e-06 57.0 132 29.5
SalBow5G0396 Salvia bowleyana HOM05D000010 ORTHO05D003912 3.4e-06 57.0 131 29.8
MELO3C015355.2 Cucumis melo HOM05D000010 ORTHO05D000063 4.4e-06 56.6 140 28.6
QL02p055032 Quercus lobata HOM05D000010 ORTHO05D016909 4.4e-06 56.6 142 28.2
RcHm_v2.0_Chr1g0361551 Rosa chinensis HOM05D000010 ORTHO05D011899 4.4e-06 56.6 148 27.0
HPP92_005134 Vanilla planifolia HOM05D000010 ORTHO05D003754 4.4e-06 56.6 132 29.5
BcaC07g40933 Brassica carinata HOM05D000010 ORTHO05D000302 5.7e-06 56.2 135 32.6
A09p56310 Brassica napus HOM05D000010 ORTHO05D000302 5.7e-06 56.2 135 32.6
C08p39270 Brassica napus HOM05D000010 ORTHO05D000302 5.7e-06 56.2 135 32.6
BraA09t41026Z Brassica rapa HOM05D000010 ORTHO05D000302 5.7e-06 56.2 135 32.6
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 5.7e-06 56.2 67 43.3
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 5.7e-06 56.2 67 43.3
CANSAT80G1319 Cannabis sativa HOM05D000010 ORTHO05D000302 5.7e-06 56.2 69 39.1
Ciclev10016434m.g Citrus clementina HOM05D000010 ORTHO05D001550 5.7e-06 56.2 116 31.0
Lalb_Chr01g0001191 Lupinus albus HOM05D000010 ORTHO05D003912 5.7e-06 56.2 132 27.3
AL4G14860 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
BcaC02g08461 Brassica carinata HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
A04p18740 Brassica napus HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
BolC4t26955H Brassica oleracea HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
BraA04t17484Z Brassica rapa HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
Carub.0004s0378 Capsella rubella HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
CARHR117630 Cardamine hirsuta HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
Hma1.2p1_0271F.1_g109130 Hydrangea macrophylla HOM05D000010 ORTHO05D003912 7.5e-06 55.8 132 29.5
QL01p004407 Quercus lobata HOM05D000010 ORTHO05D000151 7.5e-06 55.8 121 30.6
Rhsim05G0049700 Rhododendron simsii HOM05D000010 ORTHO05D003912 7.5e-06 55.8 85 40.0
RcHm_v2.0_Chr1g0333731 Rosa chinensis HOM05D000010 ORTHO05D011899 7.5e-06 55.8 148 28.4
Sp4g03450 Schrenkiella parvula HOM05D000010 ORTHO05D000302 7.5e-06 55.8 135 32.6
VMungo1309G1916 Vigna mungo HOM05D000010 ORTHO05D000302 7.5e-06 55.8 106 33.0
Aa31LG1G10380 Aethionema arabicum HOM05D000010 ORTHO05D011293 9.8e-06 55.5 144 27.8
Aa31LG7G11380 Aethionema arabicum HOM05D000010 ORTHO05D000302 9.8e-06 55.5 135 32.6
C04p54030 Brassica napus HOM05D000010 ORTHO05D000302 9.8e-06 55.5 135 32.6
Thhalv10000520m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 9.8e-06 55.5 135 32.6
Potri.014G107700 Populus trichocarpa HOM05D000010 ORTHO05D010539 9.8e-06 55.5 101 28.7
Potri.014G108000 Populus trichocarpa HOM05D000010 ORTHO05D010539 9.8e-06 55.5 101 28.7
Sabra12G0040000 Salix brachista HOM05D000010 ORTHO05D000302 9.8e-06 55.5 99 35.4
HPP92_022887 Vanilla planifolia HOM05D000010 ORTHO05D000151 9.8e-06 55.5 103 35.9


User provided reference genes

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