Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 0.0e+00 1293.9 663 100.0
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 2.0e-310 1068.5 663 85.2
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 2.7e-278 961.8 687 75.3
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 7.5e-265 917.1 693 72.6
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 5.0e-261 904.4 713 69.7
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 6.6e-261 904.0 715 69.9
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 3.6e-259 898.3 721 69.6
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 5.8e-249 864.4 720 67.1
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 1.4e-247 859.8 708 67.2
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 1.4e-247 859.8 708 67.2
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.9e-247 859.4 709 67.3
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 2.4e-247 859.0 709 67.3
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 2.4e-247 859.0 709 67.3
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 4.6e-246 854.7 707 67.2
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.2e-241 840.1 715 65.0
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 1.2e-238 830.1 692 66.8
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 9.6e-204 714.1 710 58.7
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 1.7e-163 580.5 711 50.5
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 8.6e-152 541.6 722 45.0
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 7.2e-151 538.5 721 44.9
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 4.7e-150 535.8 779 43.3
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 6.8e-149 531.9 708 46.0
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 4.9e-147 525.8 714 46.4
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 1.8e-146 523.9 721 44.4
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.6e-145 520.8 716 45.9
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 3.6e-142 509.6 765 43.3
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 2.2e-139 500.4 703 43.5
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 3.7e-139 499.6 711 42.2
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 6.4e-139 498.8 732 42.6
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 6.4e-139 498.8 732 42.6
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 7.8e-137 491.9 724 43.0
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.0e-136 491.5 740 41.2
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 2.3e-136 490.3 717 41.1
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 3.3e-135 486.5 714 40.8
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 3.3e-135 486.5 728 42.3
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 2.0e-132 477.2 719 41.9
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 5.8e-132 475.7 702 41.5
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 9.8e-132 474.9 711 42.2
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 6.4e-131 472.2 723 41.2
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 8.3e-131 471.9 704 41.9
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 3.2e-130 469.9 734 40.5
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.6e-129 467.6 663 42.5
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 4.6e-129 466.1 705 41.3
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 1.5e-127 461.1 726 40.9
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 3.3e-127 459.9 728 40.2
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 7.3e-127 458.8 710 42.0
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.5e-127 458.4 724 40.5
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 1.6e-126 457.6 724 40.5
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.1e-126 457.2 723 40.1
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.8e-126 456.8 724 40.3
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 8.1e-126 455.3 720 41.2
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 3.4e-124 449.9 597 46.4
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 5.8e-124 449.1 722 40.3
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 1.1e-122 444.9 595 46.1
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 1.6e-121 441.0 695 40.6
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 2.3e-120 437.2 660 40.0
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 3.0e-120 436.8 720 39.3
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 8.6e-120 435.3 726 39.4
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 1.1e-119 434.9 696 40.5
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 3.3e-119 433.3 708 40.4
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 4.7e-118 429.5 729 39.8
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 6.2e-118 429.1 729 39.6
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 1.1e-114 418.3 739 37.1
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 3.5e-113 413.3 716 37.0
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 3.0e-112 410.2 716 37.3
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.9e-112 409.8 710 39.0
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.8e-109 401.0 710 37.3
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 5.2e-109 399.4 710 37.5
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 6.9e-109 399.1 718 37.0
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 9.0e-109 398.7 719 36.6
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 2.0e-108 397.5 692 38.2
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 4.4e-108 396.4 714 37.3
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 3.2e-106 390.2 730 37.4
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 3.5e-105 386.7 707 36.2
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 4.6e-105 386.3 699 36.9
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 1.3e-104 384.8 710 37.5
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 1.7e-104 384.4 782 33.5
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 6.6e-104 382.5 693 38.0
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 2.5e-103 380.6 723 36.1
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 3.6e-102 376.7 742 34.8
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 4.8e-102 376.3 723 35.8
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.4e-101 374.8 726 36.0
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 1.4e-101 374.8 699 37.1
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 2.4e-101 374.0 718 36.8
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 4.0e-101 373.2 688 37.1
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 4.0e-101 373.2 721 35.4
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 9.0e-101 372.1 704 35.1
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 2.6e-100 370.5 721 35.2
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 2.9e-99 367.1 704 36.8
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 1.9e-98 364.4 781 34.3
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 1.9e-98 364.4 699 35.5
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 7.1e-98 362.5 740 34.9
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 9.3e-98 362.1 672 38.4
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 1.6e-97 361.3 687 35.7
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 1.6e-97 361.3 697 35.6
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 4.6e-97 359.8 700 35.0
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 6.7e-96 355.9 738 35.0
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 8.7e-96 355.5 748 34.1
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 1.1e-93 348.6 793 33.7
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.9e-90 337.8 697 35.3
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 6.0e-89 332.8 436 46.3
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 3.3e-87 327.0 720 32.9
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 1.6e-86 324.7 708 32.9
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.4e-85 320.9 615 36.6
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 5.3e-85 319.7 720 33.6
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 3.4e-84 317.0 468 42.7
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 4.2e-82 310.1 694 33.6
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 7.1e-82 309.3 706 32.3
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 9.3e-82 308.9 687 34.6
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 7.9e-81 305.8 542 36.2
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 1.8e-80 304.7 739 32.5
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 6.7e-80 302.8 684 34.2
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 7.4e-79 299.3 498 40.6
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 6.3e-78 296.2 482 38.4
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 8.2e-78 295.8 693 32.2
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 5.3e-77 293.1 680 32.9
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 8.5e-75 285.8 457 42.0
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 7.9e-73 279.3 617 32.9
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 7.9e-73 279.3 648 32.1
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 8.2e-70 269.2 470 39.6
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 4.5e-68 263.5 260 56.2
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 5.9e-68 263.1 589 36.0
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.5e-66 257.7 378 43.1
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 6.7e-64 249.6 314 47.1
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 1.3e-62 245.4 267 51.3
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 4.1e-61 240.4 562 32.9
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.3e-53 213.4 671 28.6
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.6e-52 211.8 663 28.5
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 2.6e-52 211.1 263 46.8
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.0e-51 209.1 663 28.7
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 2.3e-48 198.0 662 27.5
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 5.9e-44 183.3 314 37.3
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 4.0e-40 170.6 434 31.6
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 7.5e-39 166.4 350 34.9
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 3.7e-38 164.1 293 36.2
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 1.6e-36 158.7 453 29.8
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.6e-36 158.7 453 29.8
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-36 157.5 450 30.0
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.7e-35 155.2 270 34.4
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.5e-34 152.1 450 28.9
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 9.5e-34 149.4 159 50.3
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 1.7e-30 138.7 347 31.1
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 7.0e-29 133.3 172 45.3
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 4.5e-28 130.6 346 29.8
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 7.3e-26 123.2 194 40.7
Lalb_Chr10g0094391 Lupinus albus HOM05D002969 ORTHO05D003308 3.4e-23 114.4 157 42.0
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.2e-20 105.9 140 42.9
PSO017G1278 Papaver somniferum HOM05D002969 ORTHO05D003308 2.3e-19 101.7 143 39.2
RcHm_v2.0_Chr6g0291541 Rosa chinensis HOM05D002969 ORTHO05D003308 2.5e-18 98.2 120 47.5
CAN.G397.52 Capsicum annuum HOM05D002969 ORTHO05D003308 2.1e-17 95.1 123 38.2
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 1.8e-16 92.0 443 22.6
COL.COLO4_30699 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.8e-16 92.0 119 47.9
Zm00001eb254680 Zea mays HOM05D002969 ORTHO05D003308 5.8e-15 87.0 153 35.3
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 3.2e-13 81.3 126 31.7
SEGI_00337 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.2e-12 79.3 129 39.5
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 2.1e-12 78.6 183 29.5
SEGI_18157 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.9e-10 72.0 76 48.7
Potri.001G170001 Populus trichocarpa HOM05D002969 ORTHO05D003308 4.3e-10 70.9 97 46.4
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 2.1e-09 68.6 158 29.7
Nitab4.5_0010825g0020 Nicotiana tabacum HOM05D002969 ORTHO05D003308 2.3e-08 65.1 139 26.6
COL.COLO4_38602 Corchorus olitorius HOM05D002969 ORTHO05D003308 5.2e-08 63.9 92 45.7
Zm00001eb247960 Zea mays HOM05D002969 ORTHO05D003308 5.8e-07 60.5 123 30.9
Zm00001eb254790 Zea mays HOM05D002969 ORTHO05D003308 9.9e-07 59.7 122 31.1
SEGI_18101 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.2e-06 58.5 84 38.1
Peaxi162Scf00006g00211 Petunia axillaris HOM05D002969 ORTHO05D003308 2.9e-06 58.2 118 31.4


User provided reference genes

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