Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G58766 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 0.0e+00 1305.8 666 100.0
AT1G59077 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 0.0e+00 1305.8 666 100.0
AT1G59453 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 0.0e+00 1305.8 666 100.0
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 0.0e+00 1128.2 674 85.9
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.5e-292 1009.2 725 73.8
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.2e-290 1000.7 721 73.2
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 8.3e-288 993.4 723 73.0
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.0e-285 986.5 722 73.0
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 5.2e-282 974.2 722 72.3
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 3.8e-277 958.0 715 71.6
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 2.3e-269 932.2 729 69.8
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 2.7e-262 908.7 716 68.9
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 3.0e-261 905.2 715 68.3
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 2.7e-254 882.1 728 65.4
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 2.2e-240 835.9 664 68.2
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 6.2e-235 817.8 653 67.8
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 6.2e-235 817.8 653 67.5
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 1.5e-217 760.0 725 58.9
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.2e-214 750.4 621 65.9
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.6e-153 547.4 711 45.6
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.0e-153 547.0 710 45.8
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 2.7e-153 546.6 747 45.5
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.9e-153 545.4 710 44.8
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 8.0e-150 535.0 723 45.2
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.4e-149 534.3 734 44.7
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 3.5e-145 519.6 673 45.9
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 6.2e-142 508.8 741 44.0
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 3.1e-141 506.5 735 43.0
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 4.0e-141 506.1 726 43.0
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 6.8e-141 505.4 744 42.5
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 2.6e-140 503.4 743 43.2
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 4.4e-140 502.7 726 43.0
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 4.4e-140 502.7 713 43.1
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 7.5e-140 501.9 720 44.3
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.9e-140 501.5 726 42.8
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 1.9e-138 497.3 754 42.7
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 2.4e-138 496.9 736 43.5
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 3.2e-138 496.5 734 42.9
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 4.1e-138 496.1 791 41.2
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 4.1e-138 496.1 727 42.6
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 5.4e-138 495.7 740 41.4
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 7.1e-138 495.4 736 42.3
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 2.1e-137 493.8 739 43.3
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 1.7e-136 490.7 715 42.4
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 3.0e-136 490.0 715 42.2
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 1.6e-134 484.2 735 41.4
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 3.6e-134 483.0 733 41.6
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 3.6e-134 483.0 753 42.5
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 4.7e-134 482.6 686 44.6
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 2.4e-133 480.3 727 41.5
Dinv30673 Davidia involucrata HOM05D002969 ORTHO05D003308 1.9e-130 470.7 579 49.1
Dinv34333 Davidia involucrata HOM05D002969 ORTHO05D003308 1.9e-130 470.7 579 49.1
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 3.2e-130 469.9 731 41.3
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 3.5e-129 466.5 731 40.4
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 6.0e-129 465.7 733 40.2
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 1.3e-128 464.5 723 40.7
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 3.9e-128 463.0 708 41.4
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 8.7e-128 461.8 707 38.8
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 2.5e-127 460.3 729 41.0
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.2e-126 458.0 717 41.3
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 1.6e-126 457.6 734 40.3
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 6.2e-126 455.7 731 39.8
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 2.4e-125 453.8 727 40.6
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 6.9e-125 452.2 732 39.6
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 2.6e-124 450.3 746 39.8
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 7.6e-124 448.7 740 39.1
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 9.9e-124 448.4 731 38.2
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.7e-123 447.6 790 38.0
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 3.2e-122 443.4 733 38.5
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 5.4e-122 442.6 721 39.1
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 1.2e-121 441.4 718 40.4
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 1.0e-120 438.3 723 39.1
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 3.0e-120 436.8 731 39.8
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 3.9e-120 436.4 730 39.0
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 6.6e-120 435.6 722 37.8
PSO210G1276 Papaver somniferum HOM05D002969 ORTHO05D003308 3.3e-119 433.3 609 43.2
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 5.6e-119 432.6 738 39.4
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 1.3e-118 431.4 729 37.4
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 6.2e-118 429.1 731 38.6
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 8.1e-118 428.7 740 37.3
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 1.8e-117 427.6 720 39.9
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 1.8e-117 427.6 732 37.4
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 4.0e-117 426.4 727 39.6
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 6.9e-117 425.6 711 38.4
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 1.9e-114 417.5 743 35.8
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 2.4e-114 417.2 688 39.4
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 9.3e-114 415.2 710 38.7
PSO017G1981 Papaver somniferum HOM05D002969 ORTHO05D003308 9.3e-114 415.2 614 41.0
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 7.9e-113 412.1 750 37.1
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.3e-112 410.6 688 40.3
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 3.0e-112 410.2 726 39.5
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 7.4e-111 405.6 708 39.0
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 2.8e-110 403.7 719 39.1
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.0e-104 385.2 698 37.7
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 8.7e-104 382.1 701 36.9
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 7.4e-103 379.0 692 36.8
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 9.0e-101 372.1 685 36.2
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.1e-97 360.9 643 37.9
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 5.7e-95 352.8 640 38.9
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.1e-93 348.6 671 36.8
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 4.1e-93 346.7 486 45.5
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 1.9e-90 337.8 646 36.8
vmacro15026 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 7.2e-90 335.9 450 44.2
Atru.chr4.3098 Acer truncatum HOM05D002969 ORTHO05D003308 2.5e-87 327.4 483 41.8
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 8.2e-86 322.4 690 34.5
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 9.4e-82 308.9 716 32.5
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.3e-78 298.5 643 35.3
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.1e-77 295.4 760 29.6
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 4.1e-77 293.5 590 34.6
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 5.9e-76 289.7 697 31.7
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.1e-74 285.4 648 32.9
vmacro15029 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 3.6e-73 280.4 441 41.5
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 8.8e-72 275.8 721 31.6
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 1.4e-69 268.5 351 46.7
BolC7t43569H Brassica oleracea HOM05D002969 ORTHO05D003308 2.4e-69 267.7 185 75.7
BcaC06g34331 Brassica carinata HOM05D002969 ORTHO05D003308 1.7e-67 261.5 185 74.1
Zm00001eb254800 Zea mays HOM05D002969 ORTHO05D003308 1.2e-65 255.4 700 31.0
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 4.7e-65 253.4 337 43.9
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 4.5e-60 236.9 739 29.8
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.9e-58 231.5 714 28.7
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 2.7e-57 227.6 826 24.3
Glyma.19G019300 Glycine max HOM05D002969 ORTHO05D003308 3.6e-57 227.3 269 46.5
CAN.G947.7 Capsicum annuum HOM05D002969 ORTHO05D000105 4.7e-57 226.9 429 36.1
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 4.7e-57 226.9 542 32.1
C07p30270 Brassica napus HOM05D002969 ORTHO05D003308 1.2e-55 222.2 136 81.6
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 7.5e-55 219.5 278 45.0
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 9.8e-55 219.2 741 26.0
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 3.7e-54 217.2 700 27.6
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.3e-51 208.8 487 32.2
PGSC0003DMG401008881 Solanum tuberosum HOM05D002969 ORTHO05D003308 6.6e-51 206.5 305 41.0
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 6.3e-46 189.9 500 29.2
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 5.0e-43 180.3 483 29.0
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 6.6e-43 179.9 526 28.1
HPP92_011314 Vanilla planifolia HOM05D002969 ORTHO05D003308 8.0e-41 172.9 425 31.5
Zm00001eb254720 Zea mays HOM05D002969 ORTHO05D003308 4.4e-39 167.2 494 29.8
Gohir.A01G106450 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.9e-38 164.5 248 39.9
Aqoxy4G01957 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 6.4e-38 163.3 303 33.7
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.9e-37 161.8 667 27.0
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 1.6e-36 158.7 482 30.9
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 2.7e-36 157.9 520 28.5
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 6.0e-36 156.8 715 23.8
Psat0s1819g0040 Pisum sativum HOM05D002969 ORTHO05D003308 7.8e-36 156.4 265 38.5
Psat5g267240 Pisum sativum HOM05D002969 ORTHO05D003308 7.8e-36 156.4 265 38.5
Zm00001eb247940 Zea mays HOM05D002969 ORTHO05D003308 1.7e-35 155.2 226 39.8
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 3.0e-35 154.5 483 30.2
Glyma.17G219802 Glycine max HOM05D002969 ORTHO05D003308 6.2e-33 146.7 139 53.2
COL.COLO4_30697 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.1e-32 146.0 257 38.1
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 1.8e-32 145.2 753 20.7
Gorai.002G118300 Gossypium raimondii HOM05D002969 ORTHO05D003308 5.1e-27 127.1 197 40.1
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 8.6e-27 126.3 475 24.6
Zm00001eb254630 Zea mays HOM05D002969 ORTHO05D003308 2.8e-25 121.3 430 27.4
PSO700G0258 Papaver somniferum HOM05D002969 ORTHO05D003308 1.4e-24 119.0 195 40.5
SEGI_00835 Sequoiadendron giganteum HOM05D002969 ORTHO05D011582 4.4e-23 114.0 267 32.2
Peaxi162Scf00006g00026 Petunia axillaris HOM05D002969 ORTHO05D003308 9.9e-23 112.8 179 40.8
Gohir.D01G092950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 2.2e-22 111.7 197 37.6
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 4.1e-21 107.5 173 38.2
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 8.6e-19 99.8 486 23.0
Cpa.g.sc34.70 Carica papaya HOM05D002969 ORTHO05D003308 4.3e-18 97.4 132 45.5
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.5e-18 96.3 144 38.2
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.7e-14 85.5 78 51.3
Zm00001eb254760 Zea mays HOM05D002969 ORTHO05D003308 1.9e-13 82.0 258 30.2
Lalb_Chr10g0094381 Lupinus albus HOM05D002969 ORTHO05D003308 1.6e-12 79.0 77 51.9
Medtr8g062660 Medicago truncatula HOM05D000007 ORTHO05D003308 1.6e-12 79.0 85 47.1
Rhsim08G0220000 Rhododendron simsii HOM05D002969 ORTHO05D003308 1.3e-11 75.9 315 27.0
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 1.1e-10 72.8 76 47.4
Rhsim08G0238600 Rhododendron simsii HOM05D042098 ORTHO05D003308 1.5e-10 72.4 253 27.7
Migut.E00647 Erythranthe guttata HOM05D002969 ORTHO05D003308 1.2e-09 69.3 106 39.6
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 2.1e-09 68.6 224 28.1
Zm00001eb247930 Zea mays HOM05D002969 ORTHO05D003308 2.8e-09 68.2 180 31.7
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 3.4e-07 61.2 67 41.8
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 8.4e-06 56.6 134 38.1


User provided reference genes

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