Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G57906 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.7e-131 472.6 229 100.0
AL2G18550 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 3.6e-81 305.4 192 79.7
Sp3g31070 Schrenkiella parvula HOM05D000151 ORTHO05D000074 2.7e-52 209.5 195 55.9
Sp3g31050 Schrenkiella parvula HOM05D000151 ORTHO05D000074 4.7e-49 198.7 217 48.4
AT2G17690 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 5.7e-47 191.8 270 42.2
Thhalv10023184m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 3.7e-46 189.1 235 46.4
AL3G27490 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 8.3e-46 188.0 189 54.0
CARHR107940 Cardamine hirsuta HOM05D000151 ORTHO05D000074 1.4e-45 187.2 191 52.9
AL3G50670 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 2.3e-43 179.9 231 45.9
Thhalv10023034m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 7.3e-42 174.9 176 53.4
Thhalv10022699m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 3.6e-41 172.6 254 43.3
CARHR107950 Cardamine hirsuta HOM05D000151 ORTHO05D000074 5.8e-39 165.2 188 51.1
THA.LOC104807438 Tarenaya hassleriana HOM05D000151 ORTHO05D000074 2.5e-34 149.8 188 45.7
Thhalv10000476m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 1.2e-33 147.5 199 43.7
AT1G65740 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 5.8e-31 138.7 186 44.1
Thhalv10000488m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 5.8e-31 138.7 189 42.9
Thhalv10022973m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 5.8e-31 138.7 221 39.4
Thhalv10023087m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 5.8e-31 138.7 221 39.4
Carub.0002s1164 Capsella rubella HOM05D000151 ORTHO05D000074 2.9e-30 136.3 227 40.1
Carub.0002s1163 Capsella rubella HOM05D000151 ORTHO05D000074 4.1e-29 132.5 188 42.6
AT1G65770 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 9.2e-29 131.3 185 42.7
Sp2g07810 Schrenkiella parvula HOM05D000151 ORTHO05D000074 7.8e-28 128.3 153 49.0
Carub.0002s1160 Capsella rubella HOM05D000151 ORTHO05D000074 1.9e-26 123.6 194 40.2
AT1G65760 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.2e-25 120.9 183 42.6
Carub.0002s1161 Capsella rubella HOM05D000151 ORTHO05D000074 1.3e-22 110.9 222 36.9
Thhalv10027241m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 3.5e-20 102.8 180 38.3
CARHR244070 Cardamine hirsuta HOM05D000151 ORTHO05D000074 4.6e-20 102.4 200 37.0
A08p21740 Brassica napus HOM05D000151 ORTHO05D000074 7.8e-20 101.7 197 36.0
Sabra05G0086200 Salix brachista HOM05D000151 ORTHO05D000074 6.6e-19 98.6 183 35.0
Sabra05G0086300 Salix brachista HOM05D000151 ORTHO05D000074 1.1e-18 97.8 182 34.6
AL7G15370 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 1.5e-18 97.4 209 36.8
AT4G35733 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.9e-18 97.1 210 37.6
Carub.0007s0452 Capsella rubella HOM05D000151 ORTHO05D000074 1.9e-18 97.1 202 34.7
AT2G26160 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 4.3e-18 95.9 193 31.1
BcaC01g00515 Brassica carinata HOM05D000151 ORTHO05D000074 4.3e-18 95.9 173 36.4
C03p80850 Brassica napus HOM05D000151 ORTHO05D000074 4.3e-18 95.9 173 36.4
BolC3t20339H Brassica oleracea HOM05D000151 ORTHO05D000074 4.3e-18 95.9 173 36.4
BraA08t34127Z Brassica rapa HOM05D000151 ORTHO05D000074 4.3e-18 95.9 197 35.0
Carub.0002s0898 Capsella rubella HOM05D000151 ORTHO05D000074 5.6e-18 95.5 152 37.5
Potri.005G105200 Populus trichocarpa HOM05D000151 ORTHO05D000074 7.3e-18 95.1 181 33.7
Potri.005G105400 Populus trichocarpa HOM05D000151 ORTHO05D000074 9.6e-18 94.7 185 33.0
Manes.08G042200 Manihot esculenta HOM05D000151 ORTHO05D000074 1.6e-17 94.0 177 34.5
CARHR112570 Cardamine hirsuta HOM05D000151 ORTHO05D000074 8.1e-17 91.7 177 35.6
Potri.005G105100 Populus trichocarpa HOM05D000151 ORTHO05D000074 8.1e-17 91.7 183 33.9
Cfa007041 Carpinus fangiana HOM05D002155 ORTHO05D002215 1.8e-16 90.5 183 35.5
Haze_21631 Corylus avellana HOM05D000151 ORTHO05D000074 4.0e-16 89.4 183 34.4
AL4G18420 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 5.2e-16 89.0 189 31.2
CiPaw.07G005500 Carya illinoinensis HOM05D000151 ORTHO05D000074 5.2e-16 89.0 182 31.3
Haze_03688 Corylus avellana HOM05D002155 ORTHO05D002215 5.2e-16 89.0 183 37.2
Manes.01G152500 Manihot esculenta HOM05D000151 ORTHO05D000074 6.8e-16 88.6 182 31.9
FAN28G1965 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.2e-15 87.8 199 31.2
AT1G44080 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 3.4e-15 86.3 172 34.3
CsaV3_5G017550 Cucumis sativus L. HOM05D000151 ORTHO05D000074 3.4e-15 86.3 175 31.4
Prupe.7G177400 Prunus persica HOM05D000151 ORTHO05D000074 3.4e-15 86.3 178 32.6
AL5G14310 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 5.8e-15 85.5 170 32.9
AT3G25750 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 7.6e-15 85.1 172 33.1
ClCG01G020700 Citrullus lanatus HOM05D000151 ORTHO05D000074 9.9e-15 84.7 182 31.9
Prupe.7G177200 Prunus persica HOM05D000151 ORTHO05D000074 9.9e-15 84.7 195 34.4
Cfa007043 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.3e-14 84.3 184 32.1
AL1G52130 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 2.2e-14 83.6 172 32.6
Cfa007044 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.2e-14 83.6 183 36.1
Haze_05344 Corylus avellana HOM05D000151 ORTHO05D000074 2.2e-14 83.6 176 34.1
QL06p052352 Quercus lobata HOM05D000151 ORTHO05D000074 2.9e-14 83.2 182 31.3
Haze_03686 Corylus avellana HOM05D000151 ORTHO05D000074 3.8e-14 82.8 183 35.0
CiPaw.08G179700 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.9e-14 82.4 243 30.5
MD15G1235700 Malus domestica HOM05D000151 ORTHO05D000074 4.9e-14 82.4 181 30.4
QL06p052362 Quercus lobata HOM05D000151 ORTHO05D000074 8.4e-14 81.6 183 30.6
FvH4_1g10840 Fragaria vesca HOM05D000151 ORTHO05D000074 1.1e-13 81.3 199 29.1
FAN19G2104 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.1e-13 81.3 199 29.1
RcHm_v2.0_Chr2g0098071 Rosa chinensis HOM05D000151 ORTHO05D000074 1.1e-13 81.3 181 29.8
Glyma.02G043500 Glycine max HOM05D000151 ORTHO05D000074 1.4e-13 80.9 179 33.0
TPR.G32022 Trifolium pratense HOM05D000151 ORTHO05D000074 1.4e-13 80.9 176 33.0
MELO3C007953.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.9e-13 80.5 182 30.8
QL06p052388 Quercus lobata HOM05D000151 ORTHO05D000074 2.4e-13 80.1 180 33.9
CsaV3_6G047620 Cucumis sativus L. HOM05D000151 ORTHO05D000074 3.2e-13 79.7 182 30.2
FvH4_1g10810 Fragaria vesca HOM05D000151 ORTHO05D000074 3.2e-13 79.7 187 32.6
CANSAT25G1992 Cannabis sativa HOM05D000151 ORTHO05D000074 4.2e-13 79.3 197 33.0
Haze_21630 Corylus avellana HOM05D000151 ORTHO05D000074 4.2e-13 79.3 172 34.3
RcHm_v2.0_Chr2g0098151 Rosa chinensis HOM05D000151 ORTHO05D000074 4.2e-13 79.3 156 35.9
Sc11g0003610 Simmondsia chinensis HOM05D000151 ORTHO05D000074 5.4e-13 79.0 182 30.2
Medtr8g074610 Medicago truncatula HOM05D000151 ORTHO05D000074 7.1e-13 78.6 163 31.9
MELO3C005203.2 Cucumis melo HOM05D000151 ORTHO05D000074 9.3e-13 78.2 179 31.3
FAN23G0949 Fragaria x ananassa HOM05D000151 ORTHO05D000074 9.3e-13 78.2 182 30.8
ClCG01G007100 Citrullus lanatus HOM05D000151 ORTHO05D000074 1.2e-12 77.8 177 29.9
Prupe.7G177100 Prunus persica HOM05D000151 ORTHO05D000074 1.2e-12 77.8 184 33.2
Ca_03646_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 1.6e-12 77.4 176 31.2
MD02G1122000 Malus domestica HOM05D000151 ORTHO05D000074 2.1e-12 77.0 187 28.9
RcHm_v2.0_Chr2g0098081 Rosa chinensis HOM05D000151 ORTHO05D000074 2.1e-12 77.0 188 29.3
Cfa006343 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.7e-12 76.6 184 33.2
Sed0009321 Sechium edule HOM05D000151 ORTHO05D000074 2.7e-12 76.6 164 30.5
EL10Ac6g14323 Beta vulgaris HOM05D000151 ORTHO05D000074 3.5e-12 76.3 234 29.1
CARHR122780 Cardamine hirsuta HOM05D000151 ORTHO05D000074 3.5e-12 76.3 178 32.6
FAN26G2643 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.6e-12 75.9 216 28.2
TWI09G0072 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.6e-12 75.9 175 32.0
Medtr8g074640 Medicago truncatula HOM05D000151 ORTHO05D000074 6.0e-12 75.5 176 32.4
Psat4g103120 Pisum sativum HOM05D000151 ORTHO05D000074 6.0e-12 75.5 172 30.2
RcHm_v2.0_Chr1g0325601 Rosa chinensis HOM05D000151 ORTHO05D000074 6.0e-12 75.5 156 37.2
Haze_03687 Corylus avellana HOM05D000151 ORTHO05D000074 7.8e-12 75.1 184 30.4
RcHm_v2.0_Chr2g0098131 Rosa chinensis HOM05D000151 ORTHO05D000074 7.8e-12 75.1 169 29.6
Cfa006342 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.0e-11 74.7 183 33.3
VMungo0251G1278 Vigna mungo HOM05D000151 ORTHO05D000074 1.0e-11 74.7 179 31.8
Carub.0001s3497 Capsella rubella HOM05D000151 ORTHO05D000074 1.7e-11 73.9 164 30.5
Eucgr.J02498 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.7e-11 73.9 179 30.7
Medtr8g085760 Medicago truncatula HOM05D000151 ORTHO05D000074 1.7e-11 73.9 232 27.6
CARHR122800 Cardamine hirsuta HOM05D000151 ORTHO05D000074 2.3e-11 73.6 161 32.3
Prupe.7G177300 Prunus persica HOM05D000151 ORTHO05D000074 3.0e-11 73.2 173 30.1
Aa31LG2G21050 Aethionema arabicum HOM05D000151 ORTHO05D000074 5.1e-11 72.4 191 27.2
AUR62002828 Chenopodium quinoa HOM05D000151 ORTHO05D000074 6.6e-11 72.0 197 29.9
MD15G1235900 Malus domestica HOM05D000151 ORTHO05D000074 8.7e-11 71.6 181 27.6
QL06p052345 Quercus lobata HOM05D000151 ORTHO05D000074 8.7e-11 71.6 183 30.6
QL06p052381 Quercus lobata HOM05D000151 ORTHO05D000074 8.7e-11 71.6 155 36.1
Eucgr.J02503 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.5e-10 70.9 189 28.6
Eucgr.J02501 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.9e-10 70.5 189 30.2
AUR62037290 Chenopodium quinoa HOM05D000151 ORTHO05D000074 2.5e-10 70.1 194 28.4
Potri.005G105000 Populus trichocarpa HOM05D000151 ORTHO05D000074 2.5e-10 70.1 182 26.9
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 5.6e-10 68.9 163 29.4
arahy.Tifrunner.gnm1.ann1.1NU69P Arachis hypogaea HOM05D000151 ORTHO05D000074 7.3e-10 68.6 234 27.8
arahy.Tifrunner.gnm1.ann1.29PSUQ Arachis hypogaea HOM05D000151 ORTHO05D000074 7.3e-10 68.6 165 29.7
Eucgr.J02497 Eucalyptus grandis HOM05D000151 ORTHO05D000074 7.3e-10 68.6 180 28.3
Phvul.003G267700 Phaseolus vulgaris HOM05D000151 ORTHO05D000074 7.3e-10 68.6 165 29.1
Psat4g103080 Pisum sativum HOM05D000151 ORTHO05D000074 7.3e-10 68.6 163 31.9
FAN26G0934 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.3e-09 67.8 153 35.9
CARHR037360 Cardamine hirsuta HOM05D000151 ORTHO05D000074 2.8e-09 66.6 176 31.8
Lj4g0020628 Lotus japonicus HOM05D000151 ORTHO05D000074 2.8e-09 66.6 163 30.7
Medtr2g041510 Medicago truncatula HOM05D000151 ORTHO05D000074 2.8e-09 66.6 165 31.5
FvH4_1g10830 Fragaria vesca HOM05D000151 ORTHO05D000074 3.6e-09 66.2 182 28.6
FvH4_1g10860 Fragaria vesca HOM05D000151 ORTHO05D000074 3.6e-09 66.2 190 31.1
Psat4g103200 Pisum sativum HOM05D000151 ORTHO05D000074 4.8e-09 65.9 181 27.1
QL04p034313 Quercus lobata HOM05D000669 ORTHO05D000074 6.2e-09 65.5 147 34.0
FAN19G2693 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.1e-09 65.1 153 32.7
Lalb_Chr16g0391571 Lupinus albus HOM05D000151 ORTHO05D000074 1.1e-08 64.7 165 29.1
RcHm_v2.0_Chr4g0416561 Rosa chinensis HOM05D000151 ORTHO05D000074 1.1e-08 64.7 152 32.2
FAN19G1817 Fragaria x ananassa HOM05D000065 ORTHO05D000074 1.4e-08 64.3 178 29.2
FvH4_1g10880 Fragaria vesca HOM05D000151 ORTHO05D000074 1.8e-08 63.9 153 32.0
PGR102G3357 Punica granatum HOM05D000151 ORTHO05D000074 2.4e-08 63.5 178 27.5
Sabra05G0086100 Salix brachista HOM05D000151 ORTHO05D000074 2.4e-08 63.5 179 28.5
FAN19G1327 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-08 62.8 177 31.1
Eucgr.L00945 Eucalyptus grandis HOM05D000151 ORTHO05D000074 5.3e-08 62.4 186 27.4
FAN28G0369 Fragaria x ananassa HOM05D000151 ORTHO05D000074 6.9e-08 62.0 167 27.5
RcHm_v2.0_Chr4g0394811 Rosa chinensis HOM05D000151 ORTHO05D000074 6.9e-08 62.0 110 39.1
arahy.Tifrunner.gnm1.ann1.2FAG51 Arachis hypogaea HOM05D000151 ORTHO05D000074 9.0e-08 61.6 163 28.8
Cfa007042 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.2e-07 61.2 213 28.2
Medtr4g088925 Medicago truncatula HOM05D000151 ORTHO05D000074 1.5e-07 60.8 163 27.6
Psat3g058240 Pisum sativum HOM05D000151 ORTHO05D000074 1.5e-07 60.8 165 30.9
TPR.G9367 Trifolium pratense HOM05D000151 ORTHO05D000074 1.5e-07 60.8 183 29.0
RcHm_v2.0_Chr2g0134711 Rosa chinensis HOM05D000151 ORTHO05D000074 2.0e-07 60.5 111 35.1
FAN23G2120 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.6e-07 60.1 153 32.0
PGR102G1707 Punica granatum HOM05D000151 ORTHO05D000074 3.4e-07 59.7 177 26.6
QL06p052385 Quercus lobata HOM05D000151 ORTHO05D000074 4.4e-07 59.3 113 35.4
Lj5P174T68 Lonicera japonica HOM05D000151 ORTHO05D000074 7.6e-07 58.5 166 27.1
FAN28G2581 Fragaria x ananassa HOM05D000151 ORTHO05D000074 9.9e-07 58.2 177 31.6
TPR.G35490 Trifolium pratense HOM05D002941 ORTHO05D007802 9.9e-07 58.2 186 25.8
QL06p052420 Quercus lobata HOM05D000151 ORTHO05D000074 1.7e-06 57.4 196 30.1
PGSC0003DMG400006057 Solanum tuberosum HOM05D000151 ORTHO05D000074 2.2e-06 57.0 167 27.5
Lj2g0017165 Lotus japonicus HOM05D000151 ORTHO05D000074 2.9e-06 56.6 183 26.8
Sed0002957 Sechium edule HOM05D000151 ORTHO05D000074 2.9e-06 56.6 158 31.0
PSO675G1630 Papaver somniferum HOM05D000151 ORTHO05D000074 3.8e-06 56.2 180 26.7
TPR.G9359 Trifolium pratense HOM05D000151 ORTHO05D000074 3.8e-06 56.2 169 27.2
Sed0026650 Sechium edule HOM05D000151 ORTHO05D000074 4.9e-06 55.8 179 27.4
AT1G65735 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 6.4e-06 55.5 31 74.2
Medtr7g096720 Medicago truncatula HOM05D000151 ORTHO05D000074 6.4e-06 55.5 150 28.7
PSO541G6252 Papaver somniferum HOM05D000151 ORTHO05D000074 6.4e-06 55.5 166 28.9
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 8.4e-06 55.1 176 26.1
Eucgr.J02506 Eucalyptus grandis HOM05D000151 ORTHO05D000074 8.4e-06 55.1 186 24.2


User provided reference genes

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