Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.9e-111 405.2 271 100.0
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.0e-98 364.0 212 94.8
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 5.5e-97 358.2 213 84.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.3e-94 348.6 213 83.6
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.4e-86 322.0 213 77.5
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 9.4e-81 304.3 271 72.7
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 9.4e-81 304.3 271 73.1
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.2e-80 303.9 271 72.7
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 9.7e-78 294.3 214 77.6
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 6.3e-77 291.6 213 76.5
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 8.2e-77 291.2 214 66.8
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.4e-76 290.4 213 75.1
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 2.4e-76 289.7 208 70.7
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.1e-76 289.3 213 65.7
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 3.1e-76 289.3 209 74.2
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.5e-75 285.4 209 66.0
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 5.9e-75 285.0 214 75.7
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-75 284.6 210 63.3
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-75 284.6 210 63.3
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.0e-74 284.3 209 64.6
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.5e-73 280.4 206 66.0
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.2e-73 279.3 209 71.3
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.2e-73 278.9 209 64.6
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.2e-73 278.9 209 66.5
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 4.2e-73 278.9 210 63.8
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 7.2e-73 278.1 214 62.6
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 9.4e-73 277.7 210 68.1
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.6e-72 276.9 210 65.7
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.1e-72 276.6 209 65.1
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.1e-72 276.6 227 64.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.4e-71 273.9 202 66.3
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.8e-71 273.5 210 63.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.3e-71 273.1 210 61.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.0e-71 272.3 210 68.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.0e-70 270.0 209 63.2
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 5.7e-70 268.5 201 72.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.3e-69 267.3 210 62.4
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.7e-69 266.9 192 68.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.2e-69 266.5 212 67.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 4.8e-69 265.4 209 65.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 8.2e-69 264.6 197 66.5
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 8.2e-69 264.6 209 60.8
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.1e-68 264.2 214 67.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.1e-68 264.2 209 63.2
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.1e-68 264.2 203 71.4
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-68 263.8 203 61.6
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.8e-68 263.5 214 59.3
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.3e-68 261.9 213 68.5
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 9.1e-68 261.2 206 66.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.6e-67 260.4 209 64.1
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 2.0e-67 260.0 200 61.5
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.0e-66 257.7 217 58.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.7e-66 256.9 213 67.1
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.7e-66 256.9 214 57.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-66 256.9 208 66.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.7e-66 256.9 212 70.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.2e-66 256.5 209 65.6
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.2e-66 256.5 203 67.0
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.8e-66 255.8 200 62.0
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 5.0e-66 255.4 207 59.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 6.5e-66 255.0 209 59.8
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 6.5e-66 255.0 203 62.1
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.1e-65 254.2 214 64.0
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.5e-65 253.8 210 67.1
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.9e-65 253.4 207 66.7
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 4.2e-65 252.3 196 68.9
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.5e-65 251.9 213 57.7
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 9.4e-65 251.1 203 61.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.6e-64 250.4 226 56.6
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.1e-64 250.0 207 58.0
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 3.6e-64 249.2 203 66.5
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.4e-63 247.3 200 58.5
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.0e-63 245.7 188 62.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 4.4e-62 242.3 212 57.1
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.3e-61 240.7 213 57.3
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.2e-61 240.0 227 59.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.8e-61 239.6 209 57.4
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 3.7e-61 239.2 213 62.4
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 3.7e-61 239.2 210 62.9
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.7e-61 239.2 217 56.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.7e-61 239.2 206 56.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.4e-60 236.5 208 63.5
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 3.1e-60 236.1 215 54.0
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.1e-60 236.1 205 63.9
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 7.0e-60 235.0 208 64.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.1e-60 234.6 200 65.0
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.1e-60 234.6 200 65.0
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 9.1e-60 234.6 182 62.1
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.2e-59 234.2 204 59.8
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.0e-58 231.1 178 71.9
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.0e-58 231.1 208 63.9
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.3e-58 230.7 210 59.0
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.7e-58 230.3 209 56.0
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.7e-58 230.3 200 62.5
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.3e-58 229.9 200 64.0
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.3e-58 229.9 200 64.0
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.3e-58 229.9 214 57.9
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.9e-58 229.6 209 60.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.9e-58 229.6 208 63.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.5e-57 226.5 208 63.0
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.5e-57 225.3 207 50.7
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 9.5e-57 224.6 186 56.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.8e-56 223.0 209 52.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.1e-56 221.9 214 56.1
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.1e-56 221.9 214 56.1
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.4e-55 220.7 178 59.6
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 4.0e-55 219.2 198 54.5
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 8.9e-55 218.0 192 63.5
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 4.4e-54 215.7 180 58.9
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-52 209.9 177 66.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 4.1e-52 209.1 235 47.7
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.6e-51 207.2 203 52.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.7e-51 206.5 212 53.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.7e-51 206.5 212 53.8
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.5e-51 206.1 213 56.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.5e-51 205.7 211 54.0
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.8e-51 204.9 212 53.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.0e-50 202.2 209 57.4
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.0e-50 202.2 209 57.4
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 8.6e-50 201.4 183 53.6
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.1e-49 201.1 198 51.5
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.1e-49 201.1 214 55.6
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.9e-49 200.3 188 54.3
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.5e-49 199.9 198 51.0
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 4.3e-49 199.1 173 54.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.0e-47 192.6 199 49.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.0e-46 190.3 152 73.0
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 3.4e-46 189.5 156 70.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 4.4e-46 189.1 155 60.6
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.7e-45 187.2 200 47.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.2e-45 186.8 141 64.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 3.5e-43 179.5 193 48.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.7e-42 177.2 179 59.2
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.7e-42 177.2 192 48.4
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 5.0e-42 175.6 177 53.1
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 4.3e-41 172.6 198 47.0
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.1e-39 167.9 200 45.5
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-38 163.3 200 45.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-38 163.3 200 45.0
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 2.4e-36 156.8 192 45.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.2e-36 156.4 166 57.2
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 4.1e-36 156.0 196 43.4
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 7.0e-36 155.2 191 40.3
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.2e-35 154.5 199 41.2
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.2e-35 154.5 199 41.2
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 2.7e-35 153.3 121 61.2
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.7e-35 153.3 184 41.8
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.5e-35 152.9 196 40.3
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.5e-35 152.9 186 41.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 7.8e-35 151.8 209 41.6
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.0e-34 149.8 154 48.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 6.6e-34 148.7 205 39.0
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.1e-33 147.9 227 40.1
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.5e-33 146.7 195 40.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.1e-31 139.8 129 59.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.1e-28 131.3 193 38.3
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 6.2e-24 115.5 199 37.2
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.8e-23 114.0 120 49.2
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.9e-22 108.2 154 36.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.8e-21 106.3 151 36.4
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 4.3e-17 92.8 73 65.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.1e-16 90.5 74 58.1
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.2e-13 80.5 65 60.0
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.9e-13 80.1 76 53.9
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.4e-12 77.0 58 62.1
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 9.3e-12 75.1 62 54.8
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.0e-10 70.1 155 29.0
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 6.6e-10 68.9 224 25.0
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 4.3e-09 66.2 217 26.3
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.3e-08 64.7 52 65.4
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.4e-07 61.2 41 63.4


User provided reference genes

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