Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55775 Arabidopsis thaliana HOM05D011788 ORTHO05D014339 3.0e-78 295.0 144 100.0
AL1G63890 Arabidopsis lyrata HOM05D011788 ORTHO05D014339 4.5e-66 254.6 143 90.2
Carub.0001s4434 Capsella rubella HOM05D011788 ORTHO05D014339 1.5e-56 223.0 143 81.8
CARHR045490 Cardamine hirsuta HOM05D011788 ORTHO05D014339 1.2e-47 193.4 134 74.6
Thhalv10011398m.g Eutrema salsugineum HOM05D001067 ORTHO05D000876 6.2e-47 191.0 149 69.8
CARHR045460 Cardamine hirsuta HOM05D011788 ORTHO05D014339 1.8e-46 189.5 149 70.5
C03p93210 Brassica napus HOM05D011788 ORTHO05D014339 1.1e-43 180.3 143 65.7
BolC3t21619H Brassica oleracea HOM05D011788 ORTHO05D014339 4.1e-43 178.3 138 67.4
Sp1g41360 Schrenkiella parvula HOM05D001067 ORTHO05D000876 7.3e-40 167.5 145 65.5
BraA05t20628Z Brassica rapa HOM05D011788 ORTHO05D014339 5.2e-38 161.4 148 62.8
BcaC01g01566 Brassica carinata HOM05D011788 ORTHO05D014339 6.8e-38 161.0 139 63.3
C06p16230 Brassica napus HOM05D011788 ORTHO05D014339 1.7e-36 156.4 148 60.8
BolC6t36820H Brassica oleracea HOM05D011788 ORTHO05D014339 1.7e-36 156.4 148 60.8
A08p00300 Brassica napus HOM05D001067 ORTHO05D000876 1.1e-35 153.7 128 61.7
Aa31LG10G410 Aethionema arabicum HOM05D011788 ORTHO05D014339 5.4e-35 151.4 132 62.1
BcaC08g44218 Brassica carinata HOM05D011788 ORTHO05D014339 7.1e-35 151.0 148 60.1
BcaB02g10799 Brassica carinata HOM05D011788 ORTHO05D014339 1.0e-33 147.1 149 59.7
THA.LOC104815685 Tarenaya hassleriana HOM05D011788 ORTHO05D000687 5.2e-30 134.8 148 58.1
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 4.9e-12 75.1 93 47.3
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 4.9e-12 75.1 70 55.7
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 6.4e-12 74.7 146 37.7
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.9e-11 73.2 75 54.7
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 4.2e-11 72.0 71 56.3
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 5.4e-11 71.6 70 57.1
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 5.4e-11 71.6 132 38.6
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 7.1e-11 71.2 135 34.8
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 9.3e-11 70.9 91 41.8
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 3.5e-10 68.9 140 32.1
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 1.3e-09 67.0 133 36.8
SalBow8G3675 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.9e-09 65.5 80 43.8
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 8.7e-09 64.3 77 46.8
Carub.0003s2011 Capsella rubella HOM05D000913 ORTHO05D000687 1.1e-08 63.9 144 31.2
SalBow8G4274 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.5e-08 63.5 78 46.2
SalBow8G4609 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.5e-08 63.5 78 46.2
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 1.9e-08 63.2 71 45.1
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.5e-08 62.8 114 36.8
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 4.3e-08 62.0 81 42.0
VMungo0647G1590 Vigna mungo HOM05D000913 ORTHO05D000687 4.3e-08 62.0 165 29.1
CARHR095770 Cardamine hirsuta HOM05D000913 ORTHO05D000687 5.6e-08 61.6 121 34.7
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 5.6e-08 61.6 107 37.4
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 7.4e-08 61.2 81 42.0
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 7.4e-08 61.2 104 37.5
Oeu049442.1 Olea europaea HOM05D000913 ORTHO05D000687 1.3e-07 60.5 77 44.2
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 1.3e-07 60.5 71 43.7
TPR.G17672 Trifolium pratense HOM05D000913 ORTHO05D000687 1.3e-07 60.5 72 47.2
Atru.chr2.3866 Acer truncatum HOM05D000913 ORTHO05D000687 1.6e-07 60.1 70 45.7
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 1.6e-07 60.1 102 38.2
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.6e-07 60.1 71 45.1
Lalb_Chr04g0250241 Lupinus albus HOM05D000913 ORTHO05D000687 1.6e-07 60.1 74 45.9
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 1.6e-07 60.1 88 37.5
Nn5g28779 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.6e-07 60.1 125 32.0
BcaC05g30196 Brassica carinata HOM05D014993 ORTHO05D000687 2.1e-07 59.7 69 47.8
MBI16_g31488_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.1e-07 59.7 65 46.2
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 2.1e-07 59.7 80 41.2
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 2.1e-07 59.7 71 45.1
Aqoxy4G01742 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 2.8e-07 59.3 80 42.5
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 2.8e-07 59.3 80 41.2
Gohir.A04G009400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.8e-07 59.3 71 45.1
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 3.7e-07 58.9 136 30.9
AL3G33880 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 3.7e-07 58.9 140 31.4
Oeu049450.1 Olea europaea HOM05D000913 ORTHO05D000687 3.7e-07 58.9 80 42.5
Phvul.006G135600 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 3.7e-07 58.9 70 42.9
Aqoxy7G02045 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 4.8e-07 58.5 140 32.1
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 4.8e-07 58.5 70 41.4
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.8e-07 58.5 71 43.7
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.8e-07 58.5 71 45.1
QL08p002202 Quercus lobata HOM05D000913 ORTHO05D000687 4.8e-07 58.5 89 41.6
SalBow8G3635 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.8e-07 58.5 69 42.0
SalBow8G5025 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.8e-07 58.5 69 42.0
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 4.8e-07 58.5 71 43.7
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.2e-07 58.2 91 38.5
MBI14_g42478_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.2e-07 58.2 72 45.8
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.2e-07 58.2 70 45.7
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 6.2e-07 58.2 78 44.9
Thecc.09G251800 Theobroma cacao HOM05D000913 ORTHO05D000687 6.2e-07 58.2 70 41.4
C05p62790 Brassica napus HOM05D014993 ORTHO05D000687 8.1e-07 57.8 66 48.5
BolC5t34932H Brassica oleracea HOM05D014993 ORTHO05D000687 8.1e-07 57.8 66 48.5
MBI12_g26217_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 8.1e-07 57.8 135 32.6
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 8.1e-07 57.8 71 43.7
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 1.1e-06 57.4 77 39.0
ECA236G4318 Erigeron canadensis HOM05D000913 ORTHO05D000687 1.1e-06 57.4 78 43.6
MBI14_g43020_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.1e-06 57.4 72 47.2
RcHm_v2.0_Chr5g0075291 Rosa chinensis HOM05D000913 ORTHO05D000687 1.1e-06 57.4 78 39.7
TAR626G0368 Trochodendron aralioides HOM05D000913 ORTHO05D000687 1.1e-06 57.4 60 51.7
Aqoxy4G01739 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.4e-06 57.0 86 38.4
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.4e-06 57.0 77 41.6
MSTRG.15033 Avicennia marina HOM05D000913 ORTHO05D000687 1.4e-06 57.0 118 33.1
CiPaw.16G094900 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.4e-06 57.0 113 36.3
Cc05_g09760 Coffea canephora HOM05D000913 ORTHO05D000687 1.4e-06 57.0 70 41.4
Haze_10216 Corylus avellana HOM05D000913 ORTHO05D000687 1.4e-06 57.0 71 36.6
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.4e-06 57.0 70 40.0
Gohir.A04G003500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.4e-06 57.0 71 42.3
Gohir.D05G378800 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.4e-06 57.0 71 42.3
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.4e-06 57.0 71 45.1
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 1.4e-06 57.0 71 45.1
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 1.4e-06 57.0 106 38.7
TAR626G1783 Trochodendron aralioides HOM05D000913 ORTHO05D000687 1.4e-06 57.0 70 42.9
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 1.8e-06 56.6 145 32.4
Cc05_g09770 Coffea canephora HOM05D000913 ORTHO05D000687 1.8e-06 56.6 70 41.4
COL.COLO4_09796 Corchorus olitorius HOM05D000913 ORTHO05D000687 1.8e-06 56.6 99 34.3
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 1.8e-06 56.6 79 40.5
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 1.8e-06 56.6 100 37.0
MD11G1039300 Malus domestica HOM05D000913 ORTHO05D000687 1.8e-06 56.6 86 36.0
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 1.8e-06 56.6 94 38.3
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 2.4e-06 56.2 117 35.0
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 2.4e-06 56.2 87 40.2
MBI16_g31487_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.4e-06 56.2 75 38.7
MD03G1038900 Malus domestica HOM05D000913 ORTHO05D000687 2.4e-06 56.2 111 36.9
Nn5g28777 Nelumbo nucifera HOM05D000913 ORTHO05D000687 2.4e-06 56.2 81 39.5
Phvul.004G153100 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 2.4e-06 56.2 71 39.4
CSS0028038 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 3.1e-06 55.8 75 37.3
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 71 43.7
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 47.9
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 3.1e-06 55.8 68 45.6
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 3.1e-06 55.8 82 36.6
Glyma.07G098500 Glycine max HOM05D000913 ORTHO05D000687 3.1e-06 55.8 142 31.0
Lsat_1_v5_gn_7_98121 Lactuca sativa HOM05D000913 ORTHO05D000687 3.1e-06 55.8 74 43.2
Nn5g28781 Nelumbo nucifera HOM05D000913 ORTHO05D000687 3.1e-06 55.8 125 31.2
Nn7g37143 Nelumbo nucifera HOM05D000913 ORTHO05D000687 3.1e-06 55.8 71 40.8
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.1e-06 55.8 70 41.4
QL08p001984 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 116 34.5
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 4.0e-06 55.5 80 37.5
Duzib268G0517 Durio zibethinus HOM05D000913 ORTHO05D000687 4.0e-06 55.5 77 39.0
Duzib268G1311 Durio zibethinus HOM05D000913 ORTHO05D000687 4.0e-06 55.5 70 50.0
FAN16G3426 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.0e-06 55.5 81 35.8
Gohir.A04G008700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.0e-06 55.5 105 34.3
LjContig00029g0025163 Lotus japonicus HOM05D000913 ORTHO05D000687 4.0e-06 55.5 67 46.3
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.0e-06 55.5 92 38.0
SalBow8G5506 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.0e-06 55.5 107 39.3
Atru.chr1.4051 Acer truncatum HOM05D000913 ORTHO05D000687 5.3e-06 55.1 73 43.8
arahy.Tifrunner.gnm1.ann1.J75ZHQ Arachis hypogaea HOM05D000913 ORTHO05D000687 5.3e-06 55.1 84 39.3
Cfa018626 Carpinus fangiana HOM05D000913 ORTHO05D000687 5.3e-06 55.1 71 36.6
Cc02_g37590 Coffea canephora HOM05D000913 ORTHO05D000687 5.3e-06 55.1 71 42.3
DCAR_017593 Daucus carota HOM05D000913 ORTHO05D000687 5.3e-06 55.1 130 30.0
Duzib213G0636 Durio zibethinus HOM05D000913 ORTHO05D000687 5.3e-06 55.1 105 35.2
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.3e-06 55.1 76 40.8
MD10G1233100 Malus domestica HOM05D000913 ORTHO05D000687 5.3e-06 55.1 69 40.6
Manes.11G055424 Manihot esculenta HOM05D000913 ORTHO05D000687 5.3e-06 55.1 80 40.0
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 5.3e-06 55.1 70 42.9
Prupe.6G031000 Prunus persica HOM05D000913 ORTHO05D000687 5.3e-06 55.1 83 36.1
CSS0020217 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 6.9e-06 54.7 61 47.5
Duzib268G1294 Durio zibethinus HOM05D000913 ORTHO05D000687 6.9e-06 54.7 71 40.8
ECA236G0352 Erigeron canadensis HOM05D000913 ORTHO05D000687 6.9e-06 54.7 83 42.2
MD10G1233300 Malus domestica HOM05D000913 ORTHO05D000687 6.9e-06 54.7 69 40.6
Medtr5g084660 Medicago truncatula HOM05D000913 ORTHO05D000687 6.9e-06 54.7 73 42.5
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 6.9e-06 54.7 91 34.1
Aqoxy4G01736 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 9.0e-06 54.3 79 44.3
CANSAT11G0550 Cannabis sativa HOM05D000913 ORTHO05D000687 9.0e-06 54.3 71 39.4
DCAR_008754 Daucus carota HOM05D000913 ORTHO05D000687 9.0e-06 54.3 65 47.7
Duzib268G0261 Durio zibethinus HOM05D000913 ORTHO05D000687 9.0e-06 54.3 82 37.8
FvH4_3g42060 Fragaria vesca HOM05D000913 ORTHO05D000687 9.0e-06 54.3 82 34.1
Gorai.N012600 Gossypium raimondii HOM05D000913 ORTHO05D000687 9.0e-06 54.3 102 35.3
Manes.11G060024 Manihot esculenta HOM05D000913 ORTHO05D000687 9.0e-06 54.3 76 40.8
Nitab4.5_0000134g0080 Nicotiana tabacum HOM05D000913 ORTHO05D000687 9.0e-06 54.3 74 40.5
RcHm_v2.0_Chr5g0075281 Rosa chinensis HOM05D000913 ORTHO05D000687 9.0e-06 54.3 81 38.3
SalBow5G0011 Salvia bowleyana HOM05D000913 ORTHO05D000687 9.0e-06 54.3 108 35.2
SalBow5G4967 Salvia bowleyana HOM05D000913 ORTHO05D000687 9.0e-06 54.3 108 35.2


User provided reference genes

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