Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.4e-69 266.2 132 100.0
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.0e-44 182.6 107 87.9
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.5e-44 181.4 119 79.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-43 179.5 105 83.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.1e-42 176.8 119 78.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 9.3e-42 173.7 131 71.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.2e-41 173.3 108 82.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.7e-41 172.2 108 81.5
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.0e-40 170.2 119 75.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.0e-40 170.2 119 77.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.1e-40 167.9 119 75.6
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-39 166.4 119 73.9
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-39 166.4 108 76.9
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.5e-39 165.6 119 73.1
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.5e-39 165.6 119 72.3
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.5e-39 165.6 119 72.3
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.3e-39 165.2 119 73.1
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-38 163.3 108 76.9
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-37 160.2 119 71.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-37 160.2 119 71.4
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-37 160.2 119 71.4
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-37 160.2 119 71.4
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-37 160.2 119 71.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.2e-36 156.8 118 70.3
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-35 152.5 120 67.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.2e-35 152.5 120 67.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.2e-35 152.5 120 67.5
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 3.8e-35 151.8 108 74.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.2e-34 148.3 118 65.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 5.5e-34 147.9 109 71.6
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.2e-34 147.5 108 71.3
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.4e-29 133.3 91 75.8
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.2e-26 121.7 107 59.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.1e-25 119.4 109 57.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 7.9e-25 117.5 109 56.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.0e-24 117.1 106 54.7
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.9e-24 115.2 118 50.8
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 6.7e-24 114.4 104 55.8
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 8.8e-24 114.0 117 51.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.5e-23 113.2 107 47.7
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.5e-23 113.2 107 47.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.5e-23 113.2 107 47.7
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.3e-23 112.1 109 52.3
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.3e-23 112.1 118 51.7
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.3e-23 112.1 118 50.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.3e-23 112.1 108 55.6
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.4e-23 111.7 104 57.7
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 5.7e-23 111.3 107 55.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 5.7e-23 111.3 115 50.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 9.7e-23 110.5 105 49.5
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.7e-22 108.6 118 50.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 4.8e-22 108.2 107 52.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.8e-22 108.2 105 52.4
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.8e-22 108.2 105 52.4
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.3e-22 107.8 105 52.4
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.2e-22 107.5 117 48.7
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.2e-22 107.5 101 51.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 8.2e-22 107.5 104 51.0
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.2e-22 107.5 115 52.2
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.1e-21 107.1 109 53.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.1e-21 107.1 109 53.2
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.1e-21 107.1 107 51.4
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.4e-21 105.9 108 50.0
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.4e-21 105.9 117 47.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.1e-21 105.1 114 52.6
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 4.1e-21 105.1 106 50.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 9.1e-21 104.0 107 54.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.2e-20 103.6 105 50.5
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-20 103.2 106 51.9
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.0e-20 102.8 108 47.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.0e-20 102.8 108 50.0
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.0e-20 102.8 89 56.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 2.0e-20 102.8 89 57.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.6e-20 102.4 109 52.3
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.4e-20 102.1 63 82.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.4e-20 102.1 103 49.5
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 3.4e-20 102.1 93 53.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 7.7e-20 100.9 106 50.9
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.0e-19 100.5 63 81.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.3e-19 100.1 120 44.2
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.7e-19 99.8 107 51.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.9e-19 99.0 104 49.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.9e-19 99.0 104 49.0
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 3.8e-19 98.6 98 56.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.0e-19 98.2 108 46.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.5e-19 97.8 105 52.4
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 6.5e-19 97.8 89 51.7
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.4e-18 96.7 107 52.3
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.4e-18 96.7 109 49.5
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 9.4e-18 94.0 106 47.2
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 9.4e-18 94.0 104 45.2
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.6e-17 93.2 104 45.2
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.1e-17 92.8 104 45.2
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.7e-17 92.4 119 47.9
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 3.6e-17 92.0 107 47.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 8.0e-17 90.9 90 46.7
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 8.0e-17 90.9 109 44.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.0e-16 90.5 92 46.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.4e-16 90.1 110 44.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.4e-16 90.1 107 43.9
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.4e-16 90.1 106 47.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.4e-16 90.1 105 43.8
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.4e-16 90.1 108 47.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.8e-16 89.7 103 46.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.8e-16 89.7 108 48.1
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.3e-16 89.4 89 48.3
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.3e-16 89.4 93 49.5
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.3e-16 89.4 107 47.7
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 2.3e-16 89.4 104 44.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.0e-16 89.0 107 44.9
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.9e-16 88.6 111 44.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.9e-16 88.6 84 56.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.9e-16 88.6 96 47.9
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.2e-16 88.2 106 45.3
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.7e-16 87.8 104 44.2
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.5e-15 86.7 101 45.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.3e-15 85.5 118 40.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.3e-15 85.5 120 42.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.4e-15 85.1 84 52.4
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.4e-15 85.1 84 52.4
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 4.4e-15 85.1 119 42.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 7.4e-15 84.3 107 43.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.4e-15 84.3 105 42.9
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 9.7e-15 84.0 115 39.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 9.7e-15 84.0 116 41.4
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.7e-14 83.2 92 47.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.7e-14 83.2 66 53.0
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.2e-14 82.8 96 46.9
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.8e-14 82.4 98 43.9
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 3.7e-14 82.0 86 43.0
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.8e-14 81.6 119 39.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.4e-13 80.1 66 53.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.8e-13 79.7 66 53.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.8e-13 79.7 106 41.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 3.1e-13 79.0 66 54.5
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 3.1e-13 79.0 66 54.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 3.1e-13 79.0 66 54.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 7.0e-13 77.8 86 43.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 4.5e-12 75.1 99 42.4
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.0e-11 73.9 86 43.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.6e-09 66.6 69 43.5
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.0e-09 64.3 108 40.7
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 3.0e-08 62.4 95 42.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 7.5e-07 57.8 48 54.2
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.7e-06 55.5 48 52.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.8e-06 55.1 48 52.1


User provided reference genes

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