Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 6.0e-141 504.2 261 100.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.4e-129 466.5 261 93.9
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 8.9e-129 463.8 261 93.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.9e-123 446.0 247 92.7
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.5e-123 445.7 247 93.1
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.6e-120 435.6 247 91.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-119 433.3 250 90.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.3e-119 433.3 250 90.8
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.1e-117 426.0 251 89.2
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-116 423.7 251 88.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-114 416.8 250 88.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.6e-114 415.2 254 87.0
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.6e-114 415.2 254 87.0
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.4e-112 408.7 252 89.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.4e-110 403.3 252 88.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.9e-110 402.9 252 86.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.2e-104 383.6 239 82.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 6.1e-85 318.2 229 72.1
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.5e-83 313.5 248 67.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.3e-83 312.4 240 71.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.3e-82 310.5 248 67.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.4e-81 306.2 239 68.6
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 2.6e-80 302.8 252 66.7
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 3.4e-80 302.4 238 68.1
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.3e-79 300.4 248 64.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.7e-79 300.1 262 66.4
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.7e-79 300.1 262 67.6
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.9e-79 299.3 251 64.5
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.5e-79 298.1 241 64.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.2e-78 295.4 240 64.6
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 4.2e-78 295.4 248 66.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.5e-78 295.0 245 63.7
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 5.5e-78 295.0 257 64.6
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.2e-78 294.7 245 64.5
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.6e-77 293.5 247 62.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.1e-77 293.1 246 63.8
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.1e-77 293.1 252 65.1
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.6e-77 292.4 258 66.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 6.1e-77 291.6 247 66.4
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 7.9e-77 291.2 262 64.1
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.0e-76 290.8 253 62.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.0e-76 290.8 246 67.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.8e-76 290.0 246 64.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.3e-76 289.7 246 61.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.0e-76 289.3 247 66.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.0e-76 289.3 242 66.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 3.9e-76 288.9 197 74.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.1e-76 288.5 226 69.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.1e-76 288.5 246 65.4
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 6.7e-76 288.1 242 63.6
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.5e-75 286.2 239 66.9
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.3e-75 285.4 258 61.6
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 5.7e-75 285.0 243 66.3
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 9.7e-75 284.3 244 62.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.3e-74 283.9 232 67.7
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-74 283.9 241 63.9
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.7e-74 282.3 273 61.2
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.7e-74 282.3 273 61.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 6.3e-74 281.6 246 63.8
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 8.2e-74 281.2 252 61.5
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.1e-73 280.8 230 65.7
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-73 280.4 239 64.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 6.9e-73 278.1 259 62.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 9.1e-73 277.7 239 63.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.6e-72 276.2 234 65.0
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.6e-72 276.2 251 62.5
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.5e-72 275.4 202 70.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.0e-71 274.2 205 69.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.0e-71 274.2 196 69.9
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.2e-71 273.1 241 63.1
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.2e-71 273.1 246 58.9
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 2.9e-71 272.7 241 63.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-71 272.7 241 63.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-71 272.7 241 63.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.0e-71 271.9 241 62.7
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 5.0e-71 271.9 246 61.4
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 8.5e-71 271.2 215 69.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.1e-70 270.8 223 64.6
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.5e-70 269.6 223 64.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.2e-70 269.2 246 61.4
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.2e-70 268.9 227 65.2
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.2e-69 267.3 237 62.9
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.7e-69 266.2 199 68.8
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 7.9e-69 264.6 293 56.3
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.1e-68 261.9 203 66.0
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 8.8e-68 261.2 249 57.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.1e-67 260.8 240 58.3
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.0e-67 260.0 187 72.2
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.0e-67 260.0 248 58.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.6e-67 259.6 253 61.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 9.7e-67 257.7 226 61.5
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 9.7e-67 257.7 204 69.1
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.3e-66 257.3 239 60.3
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.8e-66 256.1 187 69.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.7e-66 255.8 199 65.8
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 6.3e-66 255.0 240 57.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.1e-65 254.2 241 60.2
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.4e-65 253.1 212 64.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 3.1e-65 252.7 241 57.3
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.3e-65 251.9 250 60.8
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 7.0e-65 251.5 256 54.7
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 9.1e-65 251.1 253 58.1
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-64 250.0 264 58.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 7.7e-64 248.1 226 61.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.9e-63 246.1 244 57.8
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.0e-63 245.4 218 62.8
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.5e-63 244.6 203 65.5
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.5e-62 243.0 196 62.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.2e-62 242.3 248 60.9
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.4e-62 241.1 203 64.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.7e-61 238.8 203 64.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.7e-61 238.8 248 60.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 8.0e-61 238.0 148 83.1
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.3e-60 236.5 241 56.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 6.7e-60 235.0 231 57.1
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 8.8e-60 234.6 219 59.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.5e-59 233.8 220 54.5
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.4e-59 232.3 219 58.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 7.5e-59 231.5 231 57.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 6.3e-58 228.4 138 88.4
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 8.2e-58 228.0 198 57.6
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.0e-56 223.4 230 52.2
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.7e-56 223.0 237 53.6
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.5e-56 222.6 202 60.9
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.7e-56 221.5 229 52.0
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.7e-56 221.5 239 53.1
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 6.5e-55 218.4 184 60.9
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.5e-54 216.5 230 53.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 7.2e-54 214.9 231 53.2
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 8.0e-53 211.5 233 53.6
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.8e-52 210.3 197 57.9
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 5.9e-48 195.3 196 57.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.0e-47 192.2 239 46.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.7e-45 185.7 166 61.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.4e-44 184.1 220 50.5
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.3e-44 183.3 202 54.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.7e-42 177.2 116 81.9
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.3e-42 175.3 208 49.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.7e-39 167.2 232 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 5.0e-39 165.6 199 48.7
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.2e-37 161.0 160 53.1
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.3e-36 156.8 186 48.9
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.2e-33 146.4 101 76.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.0e-32 143.7 195 45.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.9e-32 142.1 188 50.5
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-30 136.7 107 70.1
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.3e-30 136.3 96 77.1
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.6e-30 135.6 223 43.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.6e-29 134.0 105 61.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.6e-27 126.7 205 40.0
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.6e-23 112.1 93 60.2
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.6e-22 109.0 123 50.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.9e-15 86.3 130 42.3
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-13 80.5 147 45.6
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.1e-12 78.2 105 47.6
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.8e-12 77.4 110 48.2
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 1.5e-11 74.3 97 50.5
BcaC09g49784 Brassica carinata HOM05D063838 ORTHO05D039665 1.2e-08 64.7 34 82.4
C01p32960 Brassica napus HOM05D000459 ORTHO05D000798 1.2e-08 64.7 34 82.4
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 2.1e-08 63.9 63 60.3
BolC1t03236H Brassica oleracea HOM05D063838 ORTHO05D039665 2.7e-08 63.5 34 82.4
BcaB01g01142 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-07 60.5 46 67.4
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.3e-06 55.5 132 34.8


User provided reference genes

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