Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 3751.1 1907 100.0
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 3549.6 1901 95.3
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 3481.4 1908 92.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 3478.7 1907 92.3
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 3441.0 1908 91.9
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 3435.6 1908 91.7
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3283.0 1935 87.6
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3280.0 1907 88.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3269.6 1902 89.0
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3264.9 1933 87.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3260.7 1904 88.3
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 3236.4 1925 85.9
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3231.8 1952 86.2
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3231.4 1903 88.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3214.5 1960 85.6
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 3025.0 1900 83.9
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2924.0 1917 78.2
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2734.1 1915 73.8
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2410.2 1990 64.2
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2377.1 2041 62.1
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2365.5 2011 62.7
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2363.6 1983 63.2
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2352.4 2030 62.3
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2350.1 1993 63.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2340.8 1996 62.7
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2300.8 1988 61.9
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2299.2 1997 62.5
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2296.9 1999 60.7
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2291.2 1988 62.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2290.8 1966 63.1
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2284.2 1989 61.1
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2283.4 1969 62.7
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 2121 59.5
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2277.3 1981 62.4
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2235.3 2006 59.5
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2231.4 1993 61.2
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2230.3 1987 60.8
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2227.2 1989 61.1
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2215.7 1981 60.5
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2213.3 1982 59.9
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2210.6 1978 61.1
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2209.1 1977 61.0
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2204.9 1982 60.4
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2202.6 1991 60.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2200.6 1981 60.4
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2191.4 2054 58.8
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2190.6 1986 60.6
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2180.6 2001 60.1
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2179.1 1990 59.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2162.9 1986 59.6
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2159.8 1987 59.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2159.8 1980 60.1
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2155.2 1975 59.4
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2153.3 1974 59.4
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2144.8 1994 58.4
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2142.5 2103 56.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2140.5 1992 59.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2126.7 1970 59.7
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2125.1 2032 58.5
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2123.6 1994 59.3
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2088.2 1983 57.9
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2077.8 1980 58.3
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2077.4 2005 57.2
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2074.7 2012 57.0
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2074.3 1988 56.1
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2066.2 1998 56.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2064.7 2093 55.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2058.1 1979 56.5
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2050.4 1999 57.4
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 1956 58.1
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2029.2 1842 59.3
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2023.4 1987 56.8
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2019.6 2028 56.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2017.3 2005 55.8
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2015.4 2010 57.1
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2015.0 2055 54.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2012.3 1992 55.3
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2000.7 1957 57.2
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1987.6 2051 55.0
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1932.5 1988 54.3
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1919.4 1988 53.4
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1906.0 1992 55.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1889.8 1680 60.4
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1848.9 1997 53.0
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1825.8 2148 50.3
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1812.0 1881 53.7
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1793.9 1881 54.9
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1698.7 2010 50.4
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1690.2 1757 53.2
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1649.4 1664 54.7
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1600.1 1424 61.9
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1586.2 1731 52.3
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1548.5 1978 48.0
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1503.0 1703 52.1
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1501.5 1490 56.0
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1460.3 1366 58.1
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1340.9 1217 59.2
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1250.3 1904 40.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1230.3 2032 40.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1171.0 1186 55.8
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1165.2 1520 43.6
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1158.7 1174 55.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1152.9 1398 47.4
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-308 1064.3 778 70.4
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 8.1e-296 1021.5 779 68.4
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 4.9e-277 959.1 777 64.4
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-257 894.0 957 51.4
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.8e-255 887.5 838 56.4
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.3e-253 881.3 1010 49.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 6.5e-253 879.0 2136 33.0
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.8e-237 826.6 2136 31.9
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.8e-218 762.7 1182 41.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 6.2e-211 739.6 1250 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 8.6e-189 666.0 1986 31.3
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-188 665.2 1014 41.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.6e-171 608.6 415 70.8
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.6e-169 601.3 1910 29.3
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.5e-156 558.9 1613 29.9
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.2e-152 545.0 590 51.2
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.1e-148 532.7 542 54.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.8e-147 528.1 642 49.8
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.1e-132 479.6 320 71.9
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 3.8e-120 438.0 499 50.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.4e-98 364.4 324 61.1
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.6e-97 362.8 766 37.3
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-95 355.9 482 46.3
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.8e-93 349.4 408 49.0
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.3e-93 349.0 357 51.5
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.0e-89 335.9 219 73.5
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.2e-84 320.1 283 59.4
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 2.8e-78 298.9 210 68.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.8e-78 298.9 196 74.5
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.6e-78 298.5 242 64.0
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.1e-77 295.4 382 49.5
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-73 282.0 1095 27.0
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.5e-63 250.0 165 70.9
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.0e-60 239.6 162 70.4
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.6e-57 229.9 160 68.8
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.6e-52 212.6 300 44.3
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 4.5e-52 211.8 294 44.9
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 9.9e-52 210.7 149 67.8
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.9e-50 206.5 255 48.2
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 2.3e-48 199.5 424 36.6
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 7.4e-47 194.5 324 41.0
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-45 190.7 195 56.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-42 180.6 125 64.8
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.3e-40 172.9 218 50.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.8e-38 166.0 575 27.7
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.8e-38 166.0 387 34.4
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-37 164.1 325 35.1
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.4e-37 163.7 118 77.1
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 3.6e-33 149.1 130 62.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 5.3e-29 135.2 442 33.0
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 4.5e-28 132.1 90 68.9
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.5e-27 127.9 57 91.2
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 4.1e-21 109.0 111 55.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 4.1e-21 109.0 111 55.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 5.9e-20 105.1 153 45.1
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 2.9e-19 102.8 182 40.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 1.1e-18 100.9 109 52.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.0e-16 94.4 57 70.2
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.3e-16 93.2 118 44.1
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 5.2e-16 92.0 75 62.7
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 5.2e-16 92.0 75 62.7
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.5e-15 90.5 67 65.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 7.2e-10 71.6 126 41.3
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.8e-08 67.0 69 50.7
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.3e-08 66.6 127 37.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.3e-08 66.6 160 35.6
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 4.0e-08 65.9 110 36.4
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 1.5e-07 63.9 85 43.5
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.7e-06 60.5 94 39.4
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-06 60.1 77 41.6
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 4.8e-06 58.9 48 64.6
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 8.3e-06 58.2 74 37.8


User provided reference genes

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