Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.5e-107 392.9 204 100.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.9e-98 361.3 204 93.1
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.9e-94 349.4 207 91.3
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-91 339.7 206 89.3
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.6e-88 329.7 211 86.7
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 5.4e-81 304.7 215 80.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.6e-80 303.1 181 87.8
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.0e-79 300.4 211 82.5
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.9e-79 298.5 214 79.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.1e-78 297.0 211 81.5
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.6e-77 292.0 186 85.5
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.9e-74 282.3 158 94.3
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.9e-74 282.3 159 91.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.4e-74 281.2 185 81.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.4e-73 279.3 146 95.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 9.3e-73 277.3 204 72.5
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.1e-72 276.2 207 73.4
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 8.7e-71 270.8 214 71.5
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 8.7e-71 270.8 146 92.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.9e-70 269.6 204 73.5
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 4.3e-70 268.5 208 71.2
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.1e-69 266.2 209 68.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 8.1e-69 264.2 204 69.1
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.4e-67 258.5 207 67.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 5.8e-67 258.1 209 67.5
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.7e-66 256.5 204 68.1
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.7e-66 256.5 204 68.6
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.9e-66 255.8 206 66.5
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.8e-66 255.4 181 70.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.4e-66 254.6 206 67.0
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 6.4e-66 254.6 180 72.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.4e-66 254.2 206 68.4
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.4e-65 253.4 211 67.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.4e-65 252.7 209 68.4
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 9.3e-65 250.8 212 63.7
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.2e-64 250.4 207 66.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-64 250.4 205 66.3
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.1e-64 249.6 205 66.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.5e-64 248.8 207 65.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.6e-64 248.4 197 65.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.6e-64 248.4 205 65.9
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.3e-63 246.9 207 66.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.3e-63 246.9 207 66.2
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.7e-63 246.5 211 66.4
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.3e-63 246.1 211 66.4
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.3e-63 246.1 207 64.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 3.0e-63 245.7 211 66.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.0e-63 245.7 206 65.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 3.9e-63 245.4 209 66.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.1e-63 245.0 167 73.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.1e-63 245.0 207 65.7
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.6e-63 244.6 174 73.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.7e-63 244.2 146 80.1
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 8.7e-63 244.2 204 66.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.1e-62 243.8 207 65.2
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.5e-62 243.4 206 65.5
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.5e-62 243.4 177 70.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.5e-62 243.4 145 80.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.5e-62 243.4 208 64.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.9e-62 243.0 208 64.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-62 243.0 145 82.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.5e-62 242.7 206 64.1
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.3e-62 242.3 210 66.2
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 3.3e-62 242.3 225 61.8
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 3.3e-62 242.3 204 63.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.3e-62 241.9 187 66.8
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.6e-62 241.5 146 79.5
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 7.4e-62 241.1 208 63.9
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.6e-62 240.7 206 65.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.3e-61 240.4 204 61.8
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.3e-61 240.4 146 79.5
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.3e-61 240.4 204 62.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.6e-61 240.0 145 79.3
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.1e-61 239.6 208 63.0
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.8e-61 239.2 146 78.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 3.6e-61 238.8 146 78.1
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 3.6e-61 238.8 146 77.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 8.1e-61 237.7 177 68.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 8.1e-61 237.7 177 68.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-60 237.3 236 57.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.1e-60 237.3 213 62.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.1e-60 235.7 207 61.8
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 4.0e-60 235.3 208 64.9
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 5.3e-60 235.0 168 72.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 6.9e-60 234.6 146 76.7
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 6.9e-60 234.6 204 63.7
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.2e-59 233.8 206 63.1
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 2.0e-59 233.0 210 61.0
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.0e-59 233.0 146 76.7
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.0e-59 233.0 204 61.3
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.4e-59 232.3 146 77.4
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.2e-58 229.6 145 77.9
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.4e-58 228.0 147 75.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 6.4e-58 228.0 147 75.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.4e-57 226.9 207 61.4
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.4e-57 226.9 146 75.3
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 3.2e-57 225.7 146 75.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.2e-57 225.7 146 74.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 4.2e-57 225.3 253 52.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 5.5e-57 224.9 149 73.8
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 9.3e-57 224.2 143 76.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 9.3e-57 224.2 147 74.1
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.1e-56 223.0 244 56.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.7e-56 222.6 208 59.6
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.9e-56 221.1 214 60.7
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 3.0e-55 219.2 196 60.7
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 5.1e-55 218.4 166 68.1
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 5.1e-55 218.4 166 68.1
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-54 216.5 146 74.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.5e-54 216.1 206 59.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.3e-54 215.3 208 58.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 9.6e-54 214.2 214 59.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-53 212.2 204 61.3
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.8e-53 211.8 145 71.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 4.8e-53 211.8 203 61.1
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 6.2e-53 211.5 158 67.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 6.2e-53 211.5 148 70.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 8.1e-53 211.1 205 61.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-52 209.1 204 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.9e-52 208.0 146 66.4
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.0e-51 206.5 149 69.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 8.4e-50 201.1 189 58.2
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 8.4e-50 201.1 220 56.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 8.4e-50 201.1 220 56.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.9e-49 199.9 123 78.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 5.5e-49 198.4 160 63.1
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 5.5e-49 198.4 204 57.4
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.5e-48 195.7 178 61.8
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.5e-48 195.7 150 64.0
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.0e-48 194.9 170 62.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.9e-48 194.5 177 59.3
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 7.9e-48 194.5 204 52.5
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.8e-47 193.4 123 77.2
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 6.7e-47 191.4 220 54.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.1e-46 190.7 197 55.8
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.7e-45 185.7 160 65.0
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 6.3e-45 184.9 172 60.5
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.8e-44 183.3 215 51.6
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.2e-43 180.6 184 54.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.2e-43 180.6 148 60.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.1e-41 174.1 232 50.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 7.2e-41 171.4 147 62.6
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 9.3e-41 171.0 147 58.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-40 169.5 107 77.6
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.1e-38 164.1 106 75.5
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.3e-38 162.5 147 61.9
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-36 157.5 108 70.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 4.1e-36 155.6 166 54.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 6.1e-32 141.7 92 73.9
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.3e-31 139.8 89 75.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.3e-31 139.8 82 82.9
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 5.3e-28 128.6 125 56.8
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.3e-26 124.0 142 54.2
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 8.5e-26 121.3 179 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.2e-23 112.1 96 56.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.6e-22 109.8 140 40.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-18 97.8 75 65.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 3.8e-18 95.9 181 33.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-14 84.0 49 81.6
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 4.5e-11 72.4 185 33.5
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 7.7e-11 71.6 77 50.6
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.5e-09 66.6 55 63.6
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 2.6e-06 56.6 81 40.7


User provided reference genes

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