Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 9.7e-93 344.0 245 100.0
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.3e-78 296.2 243 87.2
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 4.4e-61 238.8 246 80.1
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 9.1e-59 231.1 244 75.4
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.9e-49 199.5 245 73.5
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 2.5e-48 196.4 247 73.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 7.0e-43 178.3 247 65.6
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.2e-39 167.5 247 68.4
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 2.8e-39 166.4 247 68.8
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 3.1e-38 162.9 270 54.8
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 3.1e-38 162.9 142 69.7
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 4.9e-36 155.6 240 61.7
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-35 154.5 230 65.2
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 2.3e-33 146.7 94 76.6
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 5.0e-33 145.6 230 69.6
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-32 144.4 124 70.2
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.1e-32 144.4 134 61.9
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.5e-32 143.3 97 73.2
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 4.3e-32 142.5 102 76.5
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 5.6e-32 142.1 98 72.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 9.5e-32 141.4 96 69.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.2e-31 141.0 98 72.4
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.2e-31 141.0 95 72.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.2e-31 141.0 96 71.9
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.2e-31 141.0 99 71.7
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.2e-31 141.0 96 72.9
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.6e-31 140.6 96 70.8
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 2.8e-31 139.8 96 71.9
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 3.6e-31 139.4 96 71.9
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.1e-30 137.9 96 71.9
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.4e-30 137.5 97 69.1
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.4e-30 137.5 97 69.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-30 137.1 95 69.5
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.8e-30 137.1 95 69.5
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 2.3e-30 136.7 101 69.3
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.0e-30 136.0 95 68.4
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 4.0e-30 136.0 97 69.1
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 5.2e-30 135.6 119 64.7
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 6.8e-30 135.2 97 68.0
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.8e-30 135.2 118 62.7
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.2e-29 134.4 95 68.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.6e-29 133.3 97 67.0
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 2.6e-29 133.3 97 66.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 3.4e-29 132.9 94 72.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.4e-29 132.9 99 65.7
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 4.4e-29 132.5 97 67.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 4.4e-29 132.5 97 67.0
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 5.8e-29 132.1 96 66.7
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 7.5e-29 131.7 96 65.6
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.5e-29 131.7 97 66.0
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.5e-29 131.7 96 65.6
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 9.9e-29 131.3 94 69.1
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 9.9e-29 131.3 94 69.1
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 9.9e-29 131.3 94 69.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.3e-28 131.0 97 66.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.3e-28 131.0 97 66.0
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 2.9e-28 129.8 97 67.0
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 2.9e-28 129.8 97 67.0
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 3.7e-28 129.4 139 53.2
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 4.9e-28 129.0 92 67.4
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 4.9e-28 129.0 97 63.9
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 6.4e-28 128.6 98 64.3
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.4e-28 128.6 137 52.6
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 6.4e-28 128.6 144 56.9
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 8.3e-28 128.3 97 67.0
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 8.3e-28 128.3 97 64.9
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.3e-28 128.3 97 60.8
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.1e-27 127.9 92 68.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.4e-27 127.5 91 69.2
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.4e-27 127.5 91 69.2
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.9e-27 127.1 86 75.6
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 3.2e-27 126.3 95 67.4
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.4e-27 125.6 92 65.2
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 7.1e-27 125.2 95 66.3
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.2e-26 124.4 102 64.7
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.2e-26 124.4 79 77.2
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 2.7e-26 123.2 266 34.6
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 3.5e-26 122.9 85 80.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 6.0e-26 122.1 85 69.4
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.0e-25 121.3 92 58.7
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.3e-25 120.9 94 63.8
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.7e-25 120.6 93 62.4
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.3e-25 120.2 79 75.9
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 3.0e-25 119.8 85 65.9
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 3.9e-25 119.4 86 67.4
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 5.1e-25 119.0 85 69.4
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 6.6e-25 118.6 93 61.3
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 8.6e-25 118.2 85 78.8
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.1e-24 117.9 237 38.0
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.3e-24 116.3 95 60.0
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.6e-24 115.5 98 64.3
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.2e-23 114.4 81 67.9
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 6.2e-23 112.1 85 64.7
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.1e-22 111.3 144 45.8
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 2.4e-22 110.2 140 47.9
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 3.1e-22 109.8 85 63.5
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.5e-21 107.5 99 57.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.9e-20 103.2 92 59.8
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 9.2e-19 98.2 111 51.4
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.7e-18 96.7 122 51.6
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.5e-18 96.3 81 64.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 7.8e-18 95.1 116 45.7
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.0e-17 94.7 129 45.7
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 7.3e-16 88.6 87 58.6
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 7.3e-16 88.6 87 58.6
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 9.6e-16 88.2 104 50.0
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.2e-15 87.8 122 41.8
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 6.2e-15 85.5 121 51.2
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-14 84.0 98 50.0
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 2.4e-14 83.6 97 49.5
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 4.0e-14 82.8 94 48.9
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 5.8e-13 79.0 111 42.3
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.7e-12 77.4 78 57.7
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 2.9e-12 76.6 48 75.0
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 2.9e-12 76.6 66 60.6
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 8.4e-12 75.1 74 56.8
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.4e-11 74.3 51 66.7
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.1e-08 64.7 82 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 5.6e-08 62.4 60 48.3
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 5.6e-08 62.4 60 56.7
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 7.3e-08 62.0 85 44.7
AL1G43410 Arabidopsis lyrata HOM05D021810 ORTHO05D031415 2.8e-07 60.1 85 45.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 3.6e-07 59.7 114 33.3


User provided reference genes

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