Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 0.0e+00 1703.7 902 100.0
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 0.0e+00 1402.1 937 83.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 0.0e+00 1206.4 927 73.0
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 0.0e+00 1128.6 930 71.9
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 2.2e-275 952.6 920 62.6
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.3e-272 943.3 921 63.0
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 2.1e-270 936.0 923 62.2
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.7e-267 926.4 919 62.7
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 4.1e-266 921.8 921 62.2
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.3e-264 916.0 922 62.1
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 4.6e-257 891.7 966 59.4
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 8.0e-185 651.7 1045 44.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.8e-176 624.0 1048 42.0
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.2e-94 351.3 1032 31.7
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 8.5e-94 349.4 999 31.8
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.1e-93 349.0 747 35.1
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 1.4e-93 348.6 747 35.2
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 5.5e-93 346.7 1024 31.2
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 2.7e-92 344.4 999 31.9
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 3.6e-92 344.0 1070 30.7
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 6.1e-92 343.2 999 32.7
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.3e-91 341.3 1002 31.8
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.4e-88 332.0 1021 30.8
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.4e-88 331.3 1104 29.9
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 4.1e-88 330.5 869 31.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.6e-84 318.5 946 31.6
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.3e-81 308.9 1092 29.5
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.2e-81 308.1 1054 28.7
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 8.2e-81 306.2 871 30.8
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.4e-80 305.4 1033 30.5
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 2.0e-79 301.6 939 30.0
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 4.5e-79 300.4 869 31.9
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.8e-78 297.4 1037 29.7
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.7e-76 291.2 1013 30.2
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 6.1e-76 290.0 1028 30.2
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 6.1e-76 290.0 968 29.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.0e-75 287.3 1068 29.1
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 5.7e-74 283.5 929 29.3
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 9.7e-74 282.7 949 28.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.3e-73 282.3 993 30.0
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 2.2e-73 281.6 1048 28.2
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.7e-73 280.8 1068 28.7
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 5.3e-72 276.9 924 29.2
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 5.3e-72 276.9 533 35.3
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 3.5e-71 274.2 762 30.4
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.5e-71 273.9 999 29.0
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.9e-71 273.5 645 32.7
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.0e-70 272.7 925 28.6
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.7e-70 271.9 992 28.8
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.5e-69 268.9 708 31.2
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.2e-69 267.7 1002 28.8
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 4.2e-69 267.3 955 28.5
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 5.5e-69 266.9 609 32.7
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 9.4e-69 266.2 946 29.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 2.1e-68 265.0 939 28.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.0e-67 262.7 951 28.5
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 3.0e-67 261.2 993 27.9
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 3.0e-67 261.2 1061 28.5
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 3.0e-67 261.2 844 28.0
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 2.0e-66 258.5 1048 27.3
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 2.6e-66 258.1 1045 28.6
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.7e-65 255.4 540 31.7
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.1e-64 252.7 975 28.1
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.8e-64 251.9 535 33.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 3.1e-64 251.1 770 28.4
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.1e-64 250.8 858 27.0
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 7.0e-64 250.0 844 29.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.2e-63 249.2 729 29.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 2.7e-63 248.1 939 27.5
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 3.5e-63 247.7 838 27.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.7e-62 245.4 883 28.8
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.1e-61 242.7 797 28.7
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.5e-61 242.3 327 44.0
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.2e-61 240.7 1047 27.9
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 9.5e-61 239.6 913 27.7
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.2e-60 239.2 922 27.9
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 6.8e-59 233.4 546 32.4
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.9e-59 233.0 886 27.7
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 7.5e-58 229.9 332 41.6
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.8e-57 228.0 632 29.4
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.9e-57 227.3 969 27.8
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.1e-56 226.1 628 29.5
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 5.4e-56 223.8 535 30.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 5.4e-56 223.8 369 37.1
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.5e-55 221.1 932 26.9
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.1e-53 216.1 989 26.1
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 9.5e-53 213.0 879 27.4
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 2.1e-52 211.8 629 28.0
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.4e-50 204.5 911 27.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 1.7e-49 202.2 927 26.0
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.3e-49 199.9 996 28.8
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.2e-44 186.0 1037 24.7
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.4e-43 182.6 887 25.6
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 4.0e-43 181.0 178 50.0
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 5.2e-43 180.6 350 36.0
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.5e-42 179.1 924 25.2
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.4e-40 172.6 610 26.4
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 9.2e-40 169.9 331 34.1
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.9e-37 162.2 561 26.7
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.1e-36 158.7 326 31.6
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 6.2e-36 157.1 402 30.6
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.0e-30 139.8 177 42.4
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.3e-30 139.4 200 38.5
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.9e-29 135.6 219 36.5
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.3e-25 122.9 218 29.8
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.7e-25 122.5 223 32.3
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 2.4e-24 118.6 700 28.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.9e-17 95.1 295 30.5
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 9.3e-16 90.1 238 27.7
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 3.5e-15 88.2 209 30.6
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.3e-14 86.3 81 50.6
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-11 75.9 649 23.6
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.5e-10 71.2 267 26.6


User provided reference genes

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