Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 8.5e-61 236.9 125 100.0
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 4.1e-55 218.0 125 91.2
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 5.9e-54 214.2 127 90.6
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.0e-53 213.4 125 89.6
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.3e-53 213.0 125 89.6
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 6.5e-53 210.7 125 88.0
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 8.0e-51 203.8 125 84.8
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 8.0e-51 203.8 125 84.8
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 8.0e-51 203.8 125 84.8
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 1.8e-50 202.6 125 84.0
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 6.7e-50 200.7 125 83.2
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 8.8e-50 200.3 125 84.0
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 8.8e-50 200.3 125 84.0
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 8.8e-50 200.3 125 84.0
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 2.0e-49 199.1 125 82.4
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 7.5e-49 197.2 125 81.6
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 7.5e-49 197.2 125 81.6
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 7.5e-49 197.2 125 81.6
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 1.6e-43 179.5 123 79.7
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 6.1e-43 177.6 123 76.4
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 3.0e-42 175.3 119 75.6
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 1.0e-34 150.2 99 82.8
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 5.2e-34 147.9 120 65.8
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 2.6e-33 145.6 119 62.2
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 4.4e-33 144.8 120 65.8
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 2.8e-32 142.1 120 65.0
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 6.3e-32 141.0 113 68.1
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 8.3e-32 140.6 121 66.1
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 2.4e-31 139.0 118 63.6
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 5.4e-31 137.9 121 65.3
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 7.8e-30 134.0 123 62.6
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.3e-29 133.3 120 62.5
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 5.0e-29 131.3 125 60.8
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 5.0e-29 131.3 125 60.8
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 7.3e-28 127.5 125 58.4
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 9.5e-28 127.1 125 58.4
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 4.7e-27 124.8 114 59.6
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 8.0e-19 97.4 107 47.7
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.4e-18 96.7 114 50.9
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 2.3e-18 95.9 103 50.5
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.2e-17 93.6 107 46.7
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 3.4e-17 92.0 98 52.0
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 1.3e-16 90.1 98 51.0
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.3e-16 90.1 108 46.3
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 2.9e-16 89.0 100 50.0
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 3.7e-16 88.6 110 45.5
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 6.4e-16 87.8 106 48.1
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 1.4e-15 86.7 105 47.6
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 1.9e-15 86.3 107 48.6
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 4.1e-15 85.1 104 48.1
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 4.1e-15 85.1 105 42.9
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 5.4e-15 84.7 106 47.2
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 1.2e-14 83.6 95 47.4
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 1.2e-14 83.6 104 47.1
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.1e-14 82.8 102 46.1
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 4.6e-14 81.6 119 42.0
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 4.6e-14 81.6 119 42.0
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.0e-14 81.3 113 43.4
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 6.0e-14 81.3 113 44.2
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 6.0e-14 81.3 102 45.1
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.0e-13 80.5 113 43.4
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.0e-13 80.5 113 43.4
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 1.3e-13 80.1 99 46.5
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 1.7e-13 79.7 100 43.0
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 3.0e-13 79.0 103 46.6
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 3.0e-13 79.0 101 44.6
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 3.9e-13 78.6 106 43.4
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 6.6e-13 77.8 103 43.7
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 8.6e-13 77.4 104 42.3
BcaNung06452 Brassica carinata HOM05D006176 ORTHO05D007346 1.1e-12 77.0 73 60.3
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 1.1e-12 77.0 104 41.3
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.9e-12 76.3 102 45.1
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 2.5e-12 75.9 96 46.9
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 2.5e-12 75.9 102 47.1
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 3.3e-12 75.5 98 45.9
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 4.3e-12 75.1 96 45.8
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 4.3e-12 75.1 101 43.6
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 5.6e-12 74.7 100 41.0
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 5.6e-12 74.7 94 43.6
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 7.3e-12 74.3 107 41.1
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 9.5e-12 73.9 98 44.9
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.2e-11 73.6 97 45.4
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 1.2e-11 73.6 96 41.7
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.1e-11 72.8 95 44.2
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 2.8e-11 72.4 98 44.9
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.8e-11 72.4 98 44.9
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 2.8e-11 72.4 97 43.3
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 2.8e-11 72.4 98 42.9
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 4.7e-11 71.6 95 45.3
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 4.7e-11 71.6 94 41.5
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 6.2e-11 71.2 97 42.3
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.1e-10 70.5 105 45.7
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 1.1e-10 70.5 103 42.7
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 1.8e-10 69.7 92 43.5
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 1.8e-10 69.7 102 39.2
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 1.8e-10 69.7 101 40.6
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 1.8e-10 69.7 93 43.0
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 2.3e-10 69.3 99 41.4
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 4.0e-10 68.6 113 38.9
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 8.9e-10 67.4 104 39.4
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 2.0e-09 66.2 100 42.0
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.0e-09 66.2 98 37.8
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 2.0e-09 66.2 98 43.9
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 2.6e-09 65.9 73 46.6
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 1.7e-08 63.2 108 35.2
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 2.2e-08 62.8 105 41.9
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 6.4e-08 61.2 94 39.4
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 8.3e-08 60.8 103 40.8
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 1.1e-07 60.5 76 47.4
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 1.4e-07 60.1 94 39.4
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 1.9e-07 59.7 88 43.2
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 3.2e-07 58.9 89 40.4
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 3.2e-07 58.9 103 36.9
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 5.4e-07 58.2 113 33.6
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 5.4e-07 58.2 91 38.5
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 4.6e-06 55.1 103 35.0


User provided reference genes

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