Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.0e-309 1065.8 529 100.0
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 1.4e-290 1002.3 532 92.9
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 2.9e-288 994.6 529 91.9
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 4.0e-277 957.6 530 87.7
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.6e-273 945.7 530 87.4
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.3e-264 916.0 527 85.6
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.6e-262 907.9 527 84.6
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 4.0e-261 904.4 532 83.8
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 3.4e-260 901.4 530 84.2
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 2.2e-259 898.7 527 83.9
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 8.4e-259 896.7 527 83.7
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 8.4e-259 896.7 530 83.6
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.0e-256 889.8 529 81.7
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 5.5e-186 654.8 540 59.1
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 6.8e-184 647.9 533 58.3
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 8.8e-184 647.5 540 58.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 7.5e-183 644.4 537 59.4
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.8e-182 641.7 541 57.9
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 4.1e-181 638.6 539 59.0
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 4.1e-181 638.6 545 57.8
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 8.6e-179 630.9 533 58.5
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.0e-176 624.0 529 57.5
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.0e-176 624.0 534 57.5
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.4e-176 623.6 540 56.9
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.4e-176 623.6 540 57.4
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 4.0e-176 622.1 543 56.4
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 6.8e-176 621.3 541 56.6
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 8.9e-176 620.9 527 59.2
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.4e-175 619.0 540 57.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 3.4e-175 619.0 540 56.7
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 3.4e-175 619.0 525 58.5
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 5.7e-175 618.2 532 57.0
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.3e-174 617.1 541 56.0
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 5.4e-173 611.7 534 56.6
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 7.0e-173 611.3 533 56.3
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 7.0e-173 611.3 536 56.9
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 7.8e-172 607.8 528 59.1
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.3e-171 607.1 546 54.4
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 7.3e-170 601.3 537 55.5
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 6.1e-169 598.2 531 55.2
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 6.8e-168 594.7 532 56.4
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 6.8e-168 594.7 524 58.2
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 1.2e-167 594.0 575 52.5
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.6e-167 592.8 524 58.0
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 3.4e-167 592.4 526 54.8
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 3.4e-167 592.4 532 57.0
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 8.3e-166 587.8 526 55.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 7.0e-165 584.7 536 54.1
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 2.7e-164 582.8 537 54.0
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 3.5e-164 582.4 533 54.0
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.5e-164 582.4 535 54.2
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.1e-162 577.4 537 53.1
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 3.3e-162 575.9 533 53.8
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 4.7e-161 572.0 535 54.4
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 6.2e-161 571.6 524 52.3
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.1e-160 570.9 531 52.9
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 5.2e-160 568.5 533 52.7
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 1.2e-159 567.4 551 51.4
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.0e-159 566.6 524 56.3
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.7e-158 563.5 535 53.5
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 3.7e-158 562.4 524 53.1
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 4.9e-158 562.0 535 52.9
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.4e-158 561.6 495 55.8
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 6.4e-158 561.6 532 52.3
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 8.3e-158 561.2 532 53.2
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 4.1e-157 558.9 501 55.9
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 4.1e-157 558.9 537 53.6
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.3e-155 553.1 629 47.5
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 6.6e-155 551.6 528 52.1
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.8e-153 546.2 527 55.0
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 1.2e-151 540.8 528 51.9
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 7.5e-151 538.1 509 54.4
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.7e-150 537.0 537 51.6
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 4.1e-149 532.3 527 52.8
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 5.4e-149 531.9 480 54.8
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.7e-147 526.9 529 49.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 8.6e-147 524.6 350 75.7
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 1.6e-145 520.4 533 50.8
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 8.1e-145 518.1 468 54.3
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 3.1e-144 516.2 514 50.2
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 4.4e-143 512.3 755 39.5
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 3.8e-142 509.2 474 54.9
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.6e-140 503.8 490 52.7
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 4.2e-133 479.2 501 56.1
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.1e-129 466.8 530 46.4
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 2.1e-129 466.8 529 47.3
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 1.1e-128 464.5 364 60.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.4e-128 464.2 527 47.8
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 6.9e-128 461.8 536 46.5
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 5.1e-123 445.7 438 51.8
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 3.2e-117 426.4 524 43.7
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 1.8e-112 410.6 525 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.9e-110 403.3 537 41.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 3.8e-110 402.9 528 42.6
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 9.7e-106 388.3 468 45.7
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 7.2e-101 372.1 295 58.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.1e-90 338.2 256 61.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 3.3e-90 336.7 258 60.5
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 8.5e-86 322.0 185 80.0
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 1.8e-80 304.3 526 33.8
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 7.7e-79 298.9 275 55.6
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 9.4e-77 292.0 265 57.0
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.7e-73 281.2 318 49.7
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 6.3e-73 279.3 281 50.5
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 8.2e-73 278.9 207 61.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.2e-66 258.5 257 53.7
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 3.3e-61 240.4 439 37.4
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.8e-59 234.6 264 47.0
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 4.3e-53 213.4 285 43.9
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.0e-46 190.7 189 54.5
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 9.5e-45 185.7 425 32.0
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 5.2e-35 153.3 123 61.0
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 4.4e-34 150.2 139 58.3
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 4.4e-34 150.2 139 58.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 6.4e-33 146.4 302 32.1
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.6e-31 141.7 120 55.8
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.7e-30 138.3 101 68.3
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 1.1e-27 129.0 489 26.4
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.7e-22 109.4 113 54.0
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 5.4e-16 90.1 131 39.7
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 9.6e-13 79.3 339 25.1
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 3.1e-11 74.3 407 22.1
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 3.4e-10 70.9 349 23.8
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 7.6e-10 69.7 80 47.5
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 9.9e-10 69.3 360 23.1
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 8.4e-09 66.2 38 73.7
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 8.4e-09 66.2 80 41.2
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 8.4e-09 66.2 331 24.5
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 1.9e-08 65.1 345 22.9
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 2.4e-08 64.7 33 84.8
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 2.7e-07 61.2 426 21.4
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 2.3e-06 58.2 329 21.3
COL.COLO4_16444 Corchorus olitorius HOM05D008167 ORTHO05D010296 3.0e-06 57.8 335 23.3
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 3.0e-06 57.8 338 21.3
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 3.0e-06 57.8 284 23.2
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 3.9e-06 57.4 406 22.4
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 8.7e-06 56.2 341 21.7


User provided reference genes

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