Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.8e-259 898.3 524 100.0
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 8.6e-232 807.0 529 90.4
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 4.8e-214 748.0 533 85.6
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.2e-204 716.8 547 79.5
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 7.2e-162 574.7 557 66.4
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 2.6e-159 566.2 546 65.6
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 4.7e-153 545.4 535 65.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.2e-148 530.8 560 65.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.8e-144 516.9 539 64.9
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.0e-144 516.2 539 64.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.2e-142 510.0 554 61.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.8e-139 499.2 542 61.4
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.8e-136 490.3 528 59.1
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.2e-132 477.6 572 59.8
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.9e-98 364.0 543 50.3
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.8e-97 360.1 442 55.4
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 3.9e-91 339.7 541 48.1
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 4.8e-89 332.8 541 47.5
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.1e-88 330.1 541 48.8
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 6.4e-86 322.4 529 45.6
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.8e-83 314.3 443 48.5
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 4.3e-82 309.7 538 44.1
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 4.0e-80 303.1 546 43.8
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.2e-79 301.6 370 51.6
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.4e-77 294.7 456 43.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 5.5e-77 292.7 366 50.0
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 9.3e-77 292.0 451 48.8
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 3.5e-76 290.0 554 43.9
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 3.5e-76 290.0 534 41.9
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 4.6e-76 289.7 549 40.8
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 6.0e-76 289.3 323 55.7
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 7.9e-76 288.9 476 44.7
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.0e-75 288.5 453 45.5
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.3e-75 287.3 359 52.6
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 3.9e-75 286.6 554 44.0
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 5.1e-75 286.2 560 41.4
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 5.1e-75 286.2 322 55.3
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.1e-74 285.0 331 54.7
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.9e-74 284.3 470 43.4
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.9e-74 284.3 455 44.2
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 3.3e-74 283.5 361 52.4
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.3e-74 283.5 448 49.3
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 4.3e-74 283.1 537 41.9
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.6e-73 281.2 550 42.9
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.2e-73 280.8 451 46.8
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 2.2e-73 280.8 454 43.6
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.7e-73 280.0 457 45.5
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 8.2e-73 278.9 457 44.2
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.4e-72 278.1 460 42.0
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.8e-72 277.7 373 49.3
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.2e-71 275.0 477 42.6
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-71 274.2 319 58.0
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.0e-70 271.9 177 75.1
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.0e-70 271.9 177 75.1
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 1.0e-70 271.9 388 44.8
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.5e-70 269.2 453 43.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.4e-69 268.1 329 54.4
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.9e-69 267.7 191 66.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.2e-69 266.9 445 43.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 9.3e-69 265.4 348 49.7
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.6e-68 264.6 555 42.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.7e-68 263.8 337 51.0
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.6e-68 263.5 538 41.6
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.6e-68 263.5 275 58.5
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.6e-68 263.5 465 43.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 4.6e-68 263.1 489 38.7
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 6.1e-68 262.7 557 41.3
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.0e-67 261.9 482 40.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.0e-67 261.9 550 40.5
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.1e-67 259.6 379 49.1
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 8.8e-67 258.8 140 90.0
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.8e-67 258.8 558 41.2
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.1e-66 258.5 328 51.8
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.9e-66 257.7 192 63.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.3e-66 256.9 359 49.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 5.7e-66 256.1 324 50.9
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 9.7e-66 255.4 504 38.1
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 9.7e-66 255.4 546 41.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.3e-65 255.0 538 39.0
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.2e-65 254.2 348 49.4
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.8e-65 253.8 542 37.3
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.7e-65 253.4 455 38.7
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 5.3e-64 249.6 452 46.9
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.5e-63 248.1 375 46.9
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.0e-63 247.7 457 43.5
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.4e-63 246.9 370 46.2
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 7.7e-63 245.7 463 46.0
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.0e-62 245.4 367 47.1
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.9e-62 243.8 493 39.1
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.9e-62 243.8 384 44.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.8e-62 243.4 421 40.4
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 3.8e-62 243.4 302 49.7
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 8.5e-62 242.3 567 38.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 2.5e-61 240.7 354 50.3
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.5e-61 240.7 341 46.6
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.6e-60 238.0 421 40.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 3.6e-60 236.9 502 37.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 3.0e-59 233.8 531 41.1
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 6.7e-59 232.6 456 43.4
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 6.7e-59 232.6 206 54.9
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 8.8e-59 232.3 538 39.2
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.5e-58 231.5 445 42.7
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.3e-58 230.3 426 40.4
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 3.3e-58 230.3 171 63.7
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.3e-57 228.4 524 38.2
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.8e-57 226.5 445 38.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.4e-56 224.9 246 56.5
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.1e-53 215.3 356 43.5
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 3.9e-51 206.8 411 38.9
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.8e-49 199.9 107 90.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-35 154.5 382 36.6
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 7.2e-29 132.9 90 70.0
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 8.0e-28 129.4 279 41.9
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.0e-27 129.0 288 39.9
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.8e-27 128.3 91 65.9
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 1.5e-26 125.2 123 50.4
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 4.1e-24 117.1 142 37.3
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.7e-23 114.4 170 35.9
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.3e-22 112.1 320 28.1
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.0e-22 110.2 355 30.4
BcaC08g44106 Brassica carinata HOM05D002505 ORTHO05D006559 8.0e-20 102.8 121 52.9
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.9e-17 94.4 64 67.2
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.4e-16 92.0 62 71.0
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 7.0e-16 89.7 69 63.8
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-15 89.0 62 67.7
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.5e-15 87.4 323 33.7
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.9e-14 84.0 82 47.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.6e-13 80.1 63 61.9
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 2.6e-10 71.2 287 33.1
BcaB05g24931 Brassica carinata HOM05D002505 ORTHO05D006559 1.9e-08 65.1 38 73.7
BcaC08g46840 Brassica carinata HOM05D002505 ORTHO05D006559 1.9e-08 65.1 38 73.7
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 4.6e-07 60.5 72 36.1
AL1G21270 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.7e-06 58.5 38 84.2
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis HOM05D002505 ORTHO05D006559 2.3e-06 58.2 70 31.4


User provided reference genes

Program Settings