Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.6e-266 921.0 454 100.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 6.5e-244 847.0 454 90.1
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.2e-235 818.1 461 87.9
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 9.1e-230 800.0 461 87.0
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.2e-229 799.7 460 85.4
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.0e-212 741.9 474 76.6
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-210 736.1 461 80.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.1e-210 735.7 464 80.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.1e-210 735.7 464 80.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.1e-209 731.9 464 79.7
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.0e-209 731.5 464 79.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.3e-207 726.5 476 75.6
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.3e-207 726.5 476 75.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-207 726.5 464 79.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.2e-205 719.9 477 75.1
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.0e-204 716.8 474 74.9
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 9.5e-203 710.3 476 74.2
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 8.9e-201 703.7 479 73.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.6e-192 675.6 468 72.6
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.4e-192 674.9 474 71.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 7.6e-192 674.1 474 72.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 6.4e-191 671.0 474 71.9
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 8.4e-191 670.6 465 72.9
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 5.4e-190 667.9 466 72.3
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.8e-178 628.2 331 92.7
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 7.6e-176 620.9 477 65.8
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 6.4e-175 617.8 479 64.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.1e-174 617.1 475 64.0
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-174 616.3 473 64.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.9e-174 616.3 474 64.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.6e-173 611.7 477 63.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.0e-172 610.5 473 63.4
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.3e-172 610.1 473 63.0
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-172 609.4 474 63.1
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 8.7e-172 607.4 477 64.2
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-171 606.7 475 63.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.9e-171 606.3 477 65.4
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.3e-170 603.6 475 64.0
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-170 603.2 475 62.9
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.6e-170 603.2 473 64.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.8e-170 602.4 480 62.9
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 8.1e-170 600.9 476 63.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 8.1e-170 600.9 476 63.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.1e-170 600.9 474 63.7
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.1e-169 600.5 474 62.9
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.1e-169 600.5 473 62.6
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.4e-169 600.1 476 62.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.4e-169 600.1 481 62.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.4e-169 599.4 478 62.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 9.0e-169 597.4 471 63.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 9.0e-169 597.4 480 63.1
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.5e-168 596.7 481 62.0
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.4e-168 595.5 478 62.3
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-167 593.6 479 61.8
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.8e-167 592.0 479 61.4
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.8e-167 592.0 478 61.5
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 4.9e-167 591.7 475 61.5
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.2e-166 588.6 475 60.8
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.2e-165 587.0 472 61.0
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.2e-165 587.0 471 61.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.7e-165 585.9 480 61.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 6.0e-165 584.7 478 61.3
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.5e-163 580.1 481 62.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.9e-163 579.7 479 60.1
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.3e-163 578.9 481 61.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 9.6e-163 577.4 474 60.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.3e-162 577.0 479 60.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.8e-162 575.9 542 55.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-162 575.9 513 58.5
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 8.2e-162 574.3 471 59.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 8.2e-162 574.3 491 60.1
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.2e-162 574.3 494 60.5
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.8e-161 573.2 511 58.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 6.9e-161 571.2 485 59.8
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.0e-160 569.7 464 59.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.7e-159 566.6 480 57.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.9e-159 565.8 517 54.9
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.9e-159 565.8 516 55.8
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 6.5e-159 564.7 480 57.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 8.4e-159 564.3 516 55.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.9e-158 563.1 523 57.4
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 5.5e-158 561.6 484 58.1
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 5.5e-158 561.6 516 55.6
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.6e-157 560.1 479 60.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.7e-157 559.3 479 58.0
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 6.0e-157 558.1 473 58.8
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.0e-156 557.4 478 58.4
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.8e-156 556.6 477 58.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.0e-156 555.8 475 57.5
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.1e-156 555.1 478 58.2
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.3e-155 552.0 430 64.4
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 3.7e-154 548.9 499 55.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 8.2e-154 547.7 473 58.4
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.4e-153 547.0 473 57.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.4e-153 546.2 486 57.2
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.3e-153 545.0 434 62.7
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.9e-153 544.7 525 54.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 6.5e-151 538.1 473 56.7
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 8.5e-151 537.7 517 53.6
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.5e-150 536.2 431 61.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.2e-150 534.6 475 57.5
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.6e-149 533.5 498 55.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.8e-148 530.0 530 51.5
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.7e-148 528.1 483 57.1
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 4.8e-146 521.9 478 55.6
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.4e-145 520.4 483 55.7
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 4.2e-142 508.8 476 55.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.1e-141 505.0 489 51.5
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.8e-140 503.4 476 55.3
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.1e-139 500.7 438 58.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.1e-137 492.3 477 53.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.5e-136 490.3 477 53.5
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.4e-136 489.2 386 63.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.3e-135 487.3 398 64.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.7e-135 486.9 492 50.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.3e-131 472.6 283 75.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-130 469.9 507 48.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.1e-129 466.1 389 61.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.0e-129 464.9 394 57.4
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.9e-128 461.8 388 60.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 7.7e-128 461.5 376 60.9
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.8e-127 459.1 287 71.4
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.7e-125 453.0 434 55.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 6.7e-124 448.4 457 51.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.6e-123 446.4 433 51.3
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.2e-122 441.4 434 54.1
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.5e-119 431.8 287 66.6
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 4.2e-118 429.1 437 54.0
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.7e-117 425.6 455 49.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.5e-115 418.3 353 60.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 9.5e-110 401.4 473 46.7
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.2e-108 395.6 394 54.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.6e-107 393.3 336 55.1
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.6e-102 375.6 377 48.8
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.4e-100 370.9 287 57.8
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.5e-99 367.5 536 39.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.0e-95 353.2 302 54.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.0e-95 352.4 295 57.3
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 3.3e-86 323.2 383 42.0
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.2e-82 310.5 284 52.1
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 6.6e-79 298.9 372 47.0
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.8e-76 290.8 291 52.2
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 7.3e-62 242.3 296 50.0
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.1e-57 228.4 130 88.5
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 5.1e-55 219.5 205 51.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.3e-53 214.9 194 56.2
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.7e-50 204.5 177 59.3
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.3e-39 168.3 187 53.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 3.0e-39 167.2 183 56.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.7e-39 165.6 93 81.7
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.4e-38 162.5 90 82.2
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-36 158.7 93 77.4
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-33 147.5 140 58.6
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.6e-32 143.3 126 47.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.8e-28 131.3 119 61.3
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 5.3e-28 129.8 144 43.8
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 5.3e-28 129.8 144 43.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.0e-27 127.9 87 62.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.0e-27 127.9 87 62.1
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.8e-26 123.6 108 63.0
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 5.5e-25 119.8 121 57.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.7e-21 107.1 174 41.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 9.1e-20 102.4 121 46.3
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 2.2e-13 81.3 45 80.0
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-12 77.8 137 42.3
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 4.2e-09 67.0 61 60.7
BcaC05g25858 Brassica carinata HOM05D004150 ORTHO05D032065 3.0e-07 60.8 85 47.1
BcaB07g31995 Brassica carinata HOM05D004150 ORTHO05D032065 1.5e-06 58.5 85 45.9


User provided reference genes

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