Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 6.8e-126 454.1 250 100.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 4.1e-107 391.7 238 91.6
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 5.1e-97 358.2 250 80.8
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.6e-97 357.8 242 82.6
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 2.5e-96 355.9 250 80.4
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 4.3e-96 355.1 242 80.6
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.2e-95 353.6 242 80.6
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.3e-94 349.4 254 82.3
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 9.2e-91 337.4 249 79.9
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.2e-90 337.0 253 80.6
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.3e-89 333.6 238 79.0
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.0e-89 332.4 230 81.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 5.5e-59 231.9 244 61.1
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.5e-27 126.7 297 35.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.2e-27 125.9 239 39.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 7.2e-27 125.2 244 37.7
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 6.1e-26 122.1 273 35.9
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 8.0e-26 121.7 243 37.0
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.2e-24 117.9 262 37.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 5.7e-24 115.5 255 37.6
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.7e-23 114.0 260 40.0
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 8.2e-23 111.7 281 33.8
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.8e-22 110.5 285 34.4
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.1e-22 109.8 262 38.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 4.1e-22 109.4 277 36.8
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.3e-22 109.0 310 34.8
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 9.1e-22 108.2 270 34.1
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 2.7e-21 106.7 291 33.3
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 5.9e-21 105.5 277 33.6
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 7.7e-21 105.1 166 45.8
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 7.7e-21 105.1 278 34.2
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.0e-20 104.8 282 37.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.0e-20 104.8 302 35.1
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 2.9e-20 103.2 284 37.0
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 6.5e-20 102.1 286 32.9
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 8.5e-20 101.7 293 33.8
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.5e-19 100.9 278 33.5
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.2e-19 99.4 272 35.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 4.2e-19 99.4 163 42.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.5e-19 99.0 241 32.4
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.4e-19 98.2 254 33.5
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.6e-18 96.3 262 34.7
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.1e-18 95.5 261 31.8
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 6.8e-17 92.0 264 32.6
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.8e-17 92.0 312 30.8
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.2e-16 91.3 307 32.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.6e-16 90.1 175 41.1
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.4e-16 89.4 302 32.5
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-15 87.8 284 31.3
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.2e-15 87.0 262 32.8
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 2.8e-15 86.7 165 38.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.8e-15 85.9 285 32.3
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 6.3e-15 85.5 246 32.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 6.3e-15 85.5 255 29.4
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.8e-14 84.0 292 31.8
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 2.4e-14 83.6 202 35.1
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.4e-14 83.6 253 32.0
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.2e-13 81.3 291 32.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.2e-13 81.3 135 43.0
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.2e-13 81.3 292 31.2
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.6e-13 80.9 177 39.0
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.0e-13 80.5 299 30.4
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.7e-13 80.1 243 35.0
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.7e-13 80.1 292 31.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 4.5e-13 79.3 154 38.3
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.9e-12 76.6 221 32.1
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 3.8e-12 76.3 128 41.4
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.5e-12 75.5 243 30.9
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.5e-11 74.3 283 28.6
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-11 74.3 290 31.4
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.9e-11 73.9 135 39.3
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.9e-11 73.9 135 40.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.5e-11 73.6 244 36.1
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.5e-11 73.6 291 29.9
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.5e-11 72.4 267 27.3
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 5.5e-11 72.4 280 27.9
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.5e-11 71.6 279 28.3
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 9.5e-11 71.6 269 29.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.6e-10 70.9 256 30.9
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.6e-10 70.9 271 25.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.8e-10 70.1 249 28.9
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 3.6e-10 69.7 259 30.5
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 3.6e-10 69.7 274 29.9
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 8.0e-10 68.6 280 30.0
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 8.0e-10 68.6 279 29.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.0e-09 68.2 259 30.9
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.4e-09 67.8 276 29.3
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.4e-09 67.8 278 29.5
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.8e-09 67.4 275 26.9
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.8e-09 67.4 297 29.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.8e-09 67.4 286 26.9
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.3e-09 67.0 292 30.5
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 2.3e-09 67.0 239 25.5
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 2.3e-09 67.0 239 25.5
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.3e-09 67.0 150 34.0
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.0e-09 66.6 275 29.5
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.0e-09 66.2 293 28.0
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 4.0e-09 66.2 107 39.3
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 5.2e-09 65.9 259 29.3
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 6.8e-09 65.5 260 28.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 6.8e-09 65.5 281 28.8
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 8.8e-09 65.1 260 30.0
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 8.8e-09 65.1 247 25.5
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.5e-08 64.3 271 28.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.0e-08 63.9 284 27.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.0e-08 63.9 262 27.9
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.6e-08 63.5 127 32.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.6e-08 63.5 280 28.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.6e-08 63.5 245 26.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 4.4e-08 62.8 283 28.6
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 5.7e-08 62.4 271 29.2
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 5.7e-08 62.4 283 30.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 7.5e-08 62.0 256 28.9
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 9.8e-08 61.6 276 29.3
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 9.8e-08 61.6 278 29.5
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.3e-07 61.2 247 28.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-07 61.2 284 27.8
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-07 60.8 285 28.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.2e-07 60.5 283 29.3
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 2.2e-07 60.5 275 29.8
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.8e-07 60.1 281 29.2
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 2.8e-07 60.1 268 28.0
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 2.8e-07 60.1 268 28.0
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.8e-07 60.1 286 29.0
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 2.8e-07 60.1 270 27.8
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.8e-07 60.1 292 30.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.8e-07 60.1 277 28.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.8e-07 60.1 246 25.2
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 4.9e-07 59.3 247 31.6
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 6.3e-07 58.9 270 27.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.3e-07 58.9 268 29.5
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 6.3e-07 58.9 251 25.9
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 8.3e-07 58.5 269 27.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 8.3e-07 58.5 263 25.5
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 8.3e-07 58.5 281 28.1
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.1e-06 58.2 286 26.9
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.1e-06 58.2 267 28.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.8e-06 57.4 292 25.7
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.8e-06 57.4 284 28.9
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.8e-06 57.4 289 28.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.8e-06 57.4 298 26.2
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.1e-06 56.6 273 26.7
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 3.1e-06 56.6 296 28.0
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 3.1e-06 56.6 280 27.9
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.1e-06 56.6 269 28.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 4.1e-06 56.2 260 27.7


User provided reference genes

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