Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 8.4e-76 287.0 146 100.0
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 7.8e-74 280.4 146 97.9
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.7e-73 279.3 146 96.6
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 1.5e-72 276.2 146 95.9
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 1.5e-72 276.2 146 95.9
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 9.6e-72 273.5 146 95.2
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 9.6e-72 273.5 146 95.2
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 2.8e-71 271.9 146 94.5
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 2.8e-71 271.9 146 94.5
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 4.7e-71 271.2 146 94.5
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 4.7e-71 271.2 146 94.5
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 6.2e-71 270.8 146 93.8
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 1.1e-70 270.0 146 93.8
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.8e-70 269.2 146 94.5
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.8e-70 269.2 146 93.8
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.0e-69 265.8 146 92.5
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 4.4e-69 264.6 146 91.8
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 5.8e-69 264.2 146 91.8
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 9.9e-69 263.5 146 91.8
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.3e-68 263.1 146 91.8
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.9e-68 261.9 144 92.4
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.9e-68 261.2 146 90.4
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 8.4e-68 260.4 146 90.4
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 8.4e-68 260.4 146 90.4
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 89.0
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 89.7
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 89.7
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 89.7
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 5.4e-67 257.7 146 89.7
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 7.1e-67 257.3 146 89.7
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 9.3e-67 256.9 146 89.0
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 4.6e-66 254.6 146 89.0
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 6.6e-65 250.8 146 86.3
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.5e-64 249.6 147 87.1
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 2.8e-63 245.4 146 83.6
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.4e-62 242.3 146 82.9
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 82.2
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 82.9
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 5.3e-62 241.1 146 82.9
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 82.2
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 81.5
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 81.5
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 82.2
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 4.5e-61 238.0 146 81.5
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 4.5e-61 238.0 146 81.5
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.5e-61 238.0 146 81.5
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 5.8e-61 237.7 145 80.0
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 81.5
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 81.5
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.2
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.2
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 81.5
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 80.8
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.1
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.8
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.8
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.8
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.1
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 80.8
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 78.8
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.8e-60 235.0 146 80.8
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.8e-60 235.0 147 80.3
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 3.8e-60 235.0 146 80.8
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 6.4e-60 234.2 146 80.8
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.4e-60 234.2 146 78.1
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.4e-60 234.2 146 78.1
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 8.4e-60 233.8 146 78.8
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 8.4e-60 233.8 146 79.5
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 8.4e-60 233.8 145 80.7
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.1e-59 233.4 146 80.8
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 79.5
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 78.1
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 79.5
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.1
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.1
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 79.5
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 78.8
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 78.8
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 77.4
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 77.4
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 77.4
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 79.5
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 77.4
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 76.7
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 77.4
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 77.4
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.2e-58 229.9 147 80.3
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.2e-58 229.9 147 80.3
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 76.7
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 76.7
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 77.4
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 2.1e-58 229.2 147 78.2
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.8
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.1
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 76.0
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 4.6e-58 228.0 148 77.7
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 77.4
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 6.0e-58 227.6 147 78.9
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 76.0
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 78.1
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 78.1
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 76.7
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.0e-57 226.9 147 78.9
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 76.7
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 76.0
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 78.1
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 79.5
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 78.1
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 1.8e-57 226.1 146 79.5
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.8e-57 226.1 146 76.7
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 75.3
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.3e-57 225.7 147 78.9
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.0e-57 225.3 150 78.0
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.8
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 79.5
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 75.3
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 76.0
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 5.1e-57 224.6 139 80.6
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 78.1
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.9e-56 222.6 147 75.5
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 2.5e-56 222.2 147 75.5
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 77.4
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 75.3
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 75.3
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.3e-55 219.9 147 76.2
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.6e-55 219.5 146 76.7
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.7
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 75.3
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 8.1e-55 217.2 143 74.8
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.8e-54 216.1 147 76.9
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.4e-54 215.7 147 76.9
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 3.1e-54 215.3 147 75.5
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 9.0e-54 213.8 138 79.0
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 9.0e-54 213.8 147 72.1
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.6e-53 212.2 103 100.0
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 9.9e-53 210.3 137 77.4
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.9e-52 208.0 146 67.8
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 8.4e-52 207.2 146 73.3
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 8.4e-52 207.2 147 72.8
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 5.5e-51 204.5 146 73.3
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 7.1e-51 204.1 146 71.2
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 1.2e-50 203.4 143 72.0
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 3.5e-50 201.8 102 96.1
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 7.9e-50 200.7 146 69.2
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.0e-49 200.3 146 65.8
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.0e-49 200.3 146 71.2
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 5.1e-49 198.0 146 71.9
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 3.3e-48 195.3 130 73.8
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 2.8e-47 192.2 147 71.4
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.8e-46 189.5 103 86.4
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 1.5e-45 186.4 142 65.5
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 8.7e-41 170.6 136 69.9
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 1.8e-38 162.9 146 67.1
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 4.1e-38 161.8 146 67.1
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 9.0e-38 160.6 138 55.1
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.6e-37 159.1 137 56.2
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 1.7e-36 156.4 99 79.8
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.2e-34 150.2 144 56.2
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.5e-32 142.5 146 53.4
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 3.7e-31 138.7 86 79.1
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 1.8e-30 136.3 86 80.2
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 9.4e-27 124.0 80 75.0
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 2.1e-26 122.9 86 72.1
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 6.1e-26 121.3 146 52.1
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 1.1e-19 100.5 60 78.3
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 3.6e-18 95.5 65 70.8
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 1.8e-17 93.2 126 42.9
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 4.4e-16 88.6 65 69.2
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.3e-12 77.0 131 43.5
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 1.5e-11 73.6 137 35.8
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 4.2e-11 72.0 108 37.0
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 2.3e-09 66.2 33 87.9
C06p13720 Brassica napus HOM05D003870 ORTHO05D042184 3.3e-08 62.4 44 77.3
BolC6t36544H Brassica oleracea HOM05D003870 ORTHO05D042184 3.3e-08 62.4 44 77.3


User provided reference genes

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