Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.0e-261 905.2 458 100.0
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 6.6e-244 847.0 458 94.8
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.2e-239 832.0 460 92.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.2e-234 816.2 450 92.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.8e-233 810.4 460 89.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.4e-224 781.2 452 88.9
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 4.9e-223 777.7 455 88.8
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 6.6e-220 767.3 456 86.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 4.3e-219 764.6 452 87.2
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 9.6e-219 763.5 451 87.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.1e-218 762.3 457 86.2
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.7e-218 761.1 453 86.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.1e-217 760.0 457 86.0
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 6.9e-209 730.7 451 83.6
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.7e-205 718.8 460 80.7
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 4.0e-193 678.3 356 95.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 5.3e-193 677.9 355 95.8
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 5.5e-182 641.3 453 74.2
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.6e-181 639.8 462 71.6
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 6.1e-181 637.9 463 72.4
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 7.9e-181 637.5 453 73.7
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.0e-180 637.1 459 74.9
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-180 636.7 338 95.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.3e-180 636.7 361 87.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 3.0e-180 635.6 462 72.7
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.5e-179 633.3 467 72.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.5e-179 632.5 453 73.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 7.4e-179 630.9 460 71.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.6e-178 629.8 452 74.1
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.8e-178 629.0 363 87.1
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 4.8e-178 628.2 460 74.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.1e-177 627.1 381 82.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-177 626.7 459 72.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-177 626.7 459 72.8
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-177 625.9 458 73.4
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.4e-177 625.9 379 82.6
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 9.1e-177 624.0 360 86.9
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.1e-177 624.0 380 82.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.2e-176 623.6 366 85.0
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.0e-176 622.9 366 84.7
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.6e-176 622.5 369 84.3
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.5e-176 621.7 361 85.3
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.9e-176 621.3 360 86.4
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 5.0e-175 618.2 362 84.5
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.1e-174 617.1 367 83.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.2e-174 615.5 365 83.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.5e-174 614.8 365 84.1
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 7.2e-174 614.4 366 84.7
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 9.4e-174 614.0 381 80.8
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.1e-173 612.8 387 78.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.7e-173 612.5 361 85.0
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 7.9e-173 610.9 360 84.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.3e-172 609.4 396 76.3
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.7e-172 607.8 409 74.1
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.6e-171 605.9 362 81.2
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 3.3e-171 605.5 365 83.3
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 4.4e-171 605.1 403 76.4
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 5.7e-171 604.7 361 83.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 7.4e-171 604.4 371 81.1
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 9.7e-171 604.0 462 69.9
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.8e-170 602.4 387 78.3
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.1e-169 600.5 363 84.8
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 3.1e-169 599.0 366 81.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 6.9e-169 597.8 399 76.4
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.2e-168 597.0 399 74.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.5e-168 596.7 431 72.4
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 4.5e-168 595.1 363 81.5
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 5.9e-168 594.7 381 78.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.3e-167 593.6 381 78.5
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.8e-167 592.0 360 79.4
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 3.8e-167 592.0 418 72.7
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 5.0e-167 591.7 364 81.6
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.1e-166 590.5 432 70.4
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.9e-164 582.0 367 80.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.9e-164 582.0 401 74.3
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.0e-163 579.7 349 83.4
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 3.3e-163 578.9 353 81.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 4.4e-163 578.6 364 79.1
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.4e-163 578.6 349 81.9
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.8e-162 575.9 343 82.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.8e-162 575.9 350 81.4
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.4e-161 573.5 469 64.6
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.4e-161 572.8 351 80.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.1e-161 572.0 420 71.9
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.6e-160 570.1 396 72.7
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 3.5e-160 568.9 351 80.3
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 4.5e-160 568.5 351 80.1
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 4.5e-160 568.5 351 80.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.0e-159 567.4 396 72.2
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 4.2e-158 562.0 362 79.0
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 5.5e-158 561.6 343 81.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.2e-157 560.5 361 75.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.1e-157 559.7 338 82.0
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.1e-157 559.7 495 60.2
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 3.7e-154 548.9 453 65.1
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 4.1e-153 545.4 338 80.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.2e-150 535.8 380 73.7
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 3.7e-146 522.3 313 82.7
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.7e-146 522.3 361 72.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.1e-145 517.7 386 70.2
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.5e-142 509.6 300 83.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.2e-142 509.2 298 84.9
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 5.5e-142 508.4 442 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.6e-141 506.9 344 71.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 8.0e-141 504.6 332 77.1
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 4.0e-140 502.3 344 70.9
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 6.8e-140 501.5 313 78.3
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 5.7e-139 498.4 338 71.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.3e-138 494.6 354 69.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.8e-133 479.6 282 83.3
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 8.0e-133 478.0 344 67.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.1e-129 465.7 335 70.4
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 9.2e-129 464.5 271 85.2
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-126 457.6 386 64.5
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.7e-122 442.6 323 72.4
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.1e-118 431.0 309 72.5
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.0e-116 422.5 260 80.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 6.4e-114 415.2 251 80.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 8.7e-95 351.7 208 84.1
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 3.6e-93 346.3 288 65.3
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.6e-88 330.9 185 86.5
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 5.1e-87 325.9 180 91.7
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.8e-76 290.8 362 51.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 3.4e-75 286.6 347 45.5
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 5.8e-75 285.8 335 45.4
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.2e-61 240.7 151 79.5
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.3e-61 239.2 143 83.2
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 1.0e-55 221.9 334 35.6
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.2e-53 214.2 120 86.7
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.9e-50 203.8 374 36.9
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.2e-41 172.6 108 76.9
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.5e-38 162.5 107 76.6
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.4e-36 158.3 109 75.2
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.4e-36 157.5 128 68.8
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 4.8e-29 133.3 82 84.1
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 4.8e-29 133.3 82 84.1
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 4.8e-29 133.3 82 84.1
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 2.4e-28 131.0 101 62.4
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 9.1e-28 129.0 79 79.7
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-27 128.6 82 80.5
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-27 128.6 82 80.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.7e-27 127.5 83 73.5
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 3.5e-27 127.1 108 63.0
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 4.5e-27 126.7 82 79.3
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 6.6e-26 122.9 84 79.8
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-24 117.9 64 87.5
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 3.4e-22 110.5 187 35.3
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 5.4e-20 103.2 64 82.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-17 95.5 90 61.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 5.2e-15 86.7 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 8.3e-13 79.3 43 90.7
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-12 79.0 74 56.8
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.3e-09 66.2 36 86.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 6.2e-08 63.2 35 82.9
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 8.9e-07 59.3 63 50.8
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.9e-07 59.3 37 70.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.0e-06 58.2 35 77.1


User provided reference genes

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