Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.1e-234 816.6 510 100.0
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.2e-199 698.7 511 84.7
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.7e-184 649.8 445 78.4
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.5e-180 636.7 468 84.6
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.7e-179 632.1 466 74.7
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 6.3e-179 631.3 458 74.9
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 4.2e-175 618.6 412 87.1
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 7.8e-161 571.2 407 81.3
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 3.3e-159 565.8 467 72.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.1e-158 563.1 467 72.2
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.0e-157 560.8 469 72.5
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.1e-154 550.8 467 73.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.6e-140 503.1 381 71.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 4.9e-139 498.8 285 80.7
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 6.4e-139 498.4 283 80.6
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.4e-138 496.5 398 73.1
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 9.2e-138 494.6 283 80.6
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 9.2e-138 494.6 285 79.6
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 9.2e-138 494.6 285 79.6
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.2e-137 494.2 285 79.6
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.7e-137 493.0 469 68.9
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 6.0e-137 491.9 283 78.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.7e-136 490.3 283 80.2
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.3e-136 490.0 283 77.7
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.1e-135 487.6 283 78.1
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.9e-135 486.9 283 78.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.2e-134 484.2 270 81.5
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.6e-134 483.8 285 78.9
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.1e-133 481.1 283 79.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.0e-133 479.2 285 76.5
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.1e-130 471.1 283 76.3
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.9e-130 470.3 306 73.5
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.4e-130 469.9 287 76.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.2e-130 469.5 285 77.5
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.2e-129 467.6 264 80.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.6e-129 465.7 279 75.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.8e-129 464.9 283 77.0
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 7.8e-129 464.9 283 77.0
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.3e-128 464.2 264 79.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.3e-128 464.2 283 74.6
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.7e-128 463.8 260 81.2
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 2.3e-128 463.4 260 81.2
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 2.3e-128 463.4 291 74.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 3.0e-128 463.0 279 75.3
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.9e-128 462.6 285 74.0
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 3.9e-128 462.6 279 75.6
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 6.6e-128 461.8 261 80.8
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 8.7e-128 461.5 298 71.5
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.1e-127 461.1 260 80.8
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.5e-127 460.7 268 78.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.5e-127 460.7 255 80.8
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.5e-127 459.9 270 78.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 2.5e-127 459.9 279 76.0
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.3e-127 459.5 297 72.4
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 9.6e-127 458.0 272 77.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.1e-126 456.8 285 74.4
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.1e-126 456.8 409 57.5
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 6.2e-126 455.3 255 80.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.1e-126 454.9 283 74.9
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.1e-125 454.5 279 76.3
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.1e-125 454.5 260 76.9
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.8e-125 453.8 259 79.5
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.4e-125 453.4 255 79.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 4.0e-125 452.6 259 79.2
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.0e-125 451.4 275 75.3
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.4e-124 449.1 261 78.9
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 7.6e-124 448.4 261 77.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.3e-123 447.6 265 74.7
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.3e-123 447.6 275 72.7
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.3e-123 447.6 291 71.8
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.3e-123 447.6 279 71.7
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.7e-123 447.2 285 72.6
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.2e-123 446.8 290 72.8
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.8e-123 446.0 289 73.7
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 6.4e-123 445.3 259 78.0
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.4e-122 444.1 265 74.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.4e-122 444.1 260 76.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.4e-122 444.1 260 77.3
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 5.4e-122 442.2 259 76.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.4e-122 442.2 256 78.1
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.6e-121 440.7 293 72.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.0e-120 438.0 277 73.3
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.3e-120 437.6 257 77.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.7e-120 437.2 280 72.9
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.7e-120 437.2 260 76.9
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.1e-120 435.6 275 71.6
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 8.7e-120 434.9 257 77.4
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 8.7e-120 434.9 260 76.5
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.5e-119 434.1 283 70.7
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 4.3e-119 432.6 291 69.8
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 9.6e-119 431.4 287 71.1
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.3e-118 431.0 260 75.4
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.1e-117 427.9 289 68.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.8e-117 427.2 253 73.5
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 2.4e-117 426.8 271 73.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.0e-117 426.0 259 76.4
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 5.3e-117 425.6 260 75.0
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 6.9e-117 425.2 267 73.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.2e-116 424.5 238 79.8
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 8.4e-115 418.3 269 71.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.4e-114 417.5 295 66.1
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.3e-112 410.2 343 59.2
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-111 407.5 281 68.3
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 3.7e-110 402.9 302 65.2
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.1e-109 399.8 238 75.6
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.2e-108 397.9 236 77.1
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.6e-108 396.7 298 65.1
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.3e-107 394.4 362 56.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.3e-107 394.4 341 58.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 3.8e-107 392.9 284 66.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 8.4e-107 391.7 278 66.9
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.6e-105 387.5 277 65.0
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.8e-104 384.0 260 69.6
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.4e-101 373.6 301 59.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.4e-100 369.8 287 61.0
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.6e-97 360.9 204 78.4
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.3e-96 357.8 272 64.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.8e-94 349.4 206 73.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.5e-90 337.0 295 53.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.9e-87 327.4 183 79.8
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-86 324.7 195 75.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.5e-84 317.8 268 59.0
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 5.9e-84 315.8 176 82.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.4e-82 311.2 173 82.1
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.4e-82 311.2 173 82.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.2e-82 310.1 172 82.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.4e-82 308.5 275 54.5
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.9e-81 305.4 204 73.0
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.0e-80 305.1 173 80.9
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 6.7e-80 302.4 245 60.4
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.1e-79 301.6 194 73.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 6.3e-78 295.8 269 57.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.6e-73 281.2 244 59.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.7e-70 271.2 203 66.0
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.7e-70 270.0 230 57.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.0e-67 261.9 268 51.5
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.8e-62 243.8 191 60.2
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 6.3e-62 242.7 247 48.2
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.7e-60 235.7 275 45.1
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.0e-55 221.1 139 74.1
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.4e-55 220.3 135 76.3
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.8e-55 218.8 204 55.4
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 4.8e-54 216.5 197 52.3
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.1e-53 213.4 152 67.8
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 7.2e-50 202.6 231 48.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 6.1e-49 199.5 230 46.1
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 4.9e-46 189.9 174 54.6
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 9.5e-42 175.6 256 40.6
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 8.9e-40 169.1 128 60.2
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.2e-39 168.7 124 59.7
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.4e-29 135.2 83 68.7
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.1e-29 133.7 80 73.8
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 2.4e-13 81.3 53 64.2
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.7e-12 77.8 50 62.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.7e-12 77.8 50 62.0
PRCOL_00003402 Prasinoderma coloniale HOM05D034583 ORTHO05D334032 4.6e-12 77.0 191 32.5
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 9.0e-08 62.8 188 26.1
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 2.2e-06 58.2 143 28.0
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 3.8e-06 57.4 210 28.6


User provided reference genes

Program Settings